5.9
CiteScore
5.9
Impact Factor

2023 Vol. 50, No. 1

Editorial
JGG in 2022: challenges, opportunities, and prospects
Xiaoxuan Guo, Xiu-Fen Song, Jianru Zuo
2023, 50(1): 1-2. doi: 10.1016/j.jgg.2023.01.004
Abstract (176) PDF (18)
Abstract:
Viewpoint
Biogenesis of autophagosomes from the ERGIC membrane system
Yaping Han, Shulin Li, Liang Ge
2023, 50(1): 3-6. doi: 10.1016/j.jgg.2022.07.001
Abstract (194) PDF (17)
Abstract:
Original research
Quantitative proteomics reveals key pathways in the symbiotic interface and the likely extracellular property of soybean symbiosome
Yu Luo, Wei Liu, Juan Sun, Zheng-Rong Zhang, Wei-Cai Yang
2023, 50(1): 7-19. doi: 10.1016/j.jgg.2022.04.004
Abstract (415) PDF (93)
Abstract:
An effective symbiosis between legumes and rhizobia relies largely on diverse proteins at the plant-rhizobium interface for material transportation and signal transduction during symbiotic nitrogen fixation. Here, we report a comprehensive proteome atlas of the soybean symbiosome membrane (SM), peribacteroid space (PBS), and root microsomal fraction (RMF) using state-of-the-art label-free quantitative proteomic technology. In total, 1759 soybean proteins with diverse functions are detected in the SM, and 1476 soybean proteins and 369 rhizobial proteins are detected in the PBS. The diversity of SM proteins detected suggests multiple origins of the SM. Quantitative comparative analysis highlights amino acid metabolism and nutrient uptake in the SM, indicative of the key pathways in nitrogen assimilation. The detection of soybean secretory proteins in the PBS and receptor-like kinases in the SM provides evidence for the likely extracellular property of the symbiosome and the potential signaling communication between both symbionts at the symbiotic interface. Our proteomic data provide clues for how some of the sophisticated regulation between soybean and rhizobium at the symbiotic interface is achieved, and suggest approaches for symbiosis engineering.
Adipose Rheb deficiency promotes miR-182-5p expression via the cAMP/PPARγ signaling pathway
Jie Wen, Jiangming Deng, Ting Xiao, Yu Liu, Wen Meng
2023, 50(1): 20-26. doi: 10.1016/j.jgg.2022.04.013
Abstract (196) PDF (13)
Abstract:
Dysregulation of microRNAs (miRNAs) in adipocytes plays a critical role in the pathogenesis of obesity. However, the signaling mechanisms regulating miRNAs production in adipose tissue remain largely unclear. Here, we show that adipose tissue-specific knockout of Ras homolog enriched in brain (Rheb), a direct upstream activator of mTOR, increases miR-182-5p level in mouse subcutaneous white adipose tissues. Interestingly, the inhibition of mTOR signaling by rapamycin has no effect on miR-182-5p level in primary subcutaneous white adipocytes, suggesting the presence of a mTOR-independent mechanism regulating Rheb-mediated miR-182-5p expression. Consistent with this view, Rheb-ablation activates the cAMP/PPARγ signaling pathway. In addition, treatment of white adipocytes with pioglitazone, a PPARγ agonist, dramatically upregulates miR-182-5p levels. Our study reveals a unique mechanism by which Rheb regulates miR-182-5p in adipocytes. Given that increasing miR-182-5p in adipose tissue promotes beige fat development, our study also suggests a unique mechanism by which Rheb promotes thermogenesis and energy expenditure.
Chemotherapy suppresses SHH gene expression via a specific enhancer
Yafei Zhang, Jianqiong Lin, Kaibin Yang, Zhicao Yue
2023, 50(1): 27-37. doi: 10.1016/j.jgg.2022.08.002
Abstract (262) PDF (40)
Abstract:
Sonic hedgehog (SHH) signaling is a key regulator of embryonic development and tissue homeostasis that is involved in gastrointestinal (GI) cancer progression. Regulation of SHH gene expression is a paradigm of long-range enhancer function. Using the classical chemotherapy drug 5-fluorouracil (5FU) as an example, here we show that SHH gene expression is suppressed by chemotherapy. SHH is downstream of immediate early genes (IEGs), including Early growth response 1 (Egr1). A specific 139 kb upstream enhancer is responsible for its down-regulation. Knocking down EGR1 expression or blocking its binding to this enhancer renders SHH unresponsive to chemotherapy. We further demonstrate that down-regulation of SHH expression does not depend on 5FU's impact on nucleotide metabolism or DNA damage; rather, a sustained oxidative stress response mediates this rapid suppression. This enhancer is present in a wide range of tumors and normal tissues, thus providing a target for cancer chemotherapy and its adverse effects on normal tissues. We propose that SHH is a stress-responsive gene downstream of IEGs, and that traditional chemotherapy targets a specific enhancer to suppress its expression.
Characterization of heavy-chain antibody gene repertoires in Bactrian camels
Yuexing Liu, Li Yi, Yixue Li, Zhen Wang, Jirimutu
2023, 50(1): 38-45. doi: 10.1016/j.jgg.2022.04.010
Abstract (296) PDF (29)
Abstract:
Camelids are the only mammals that can produce functional heavy-chain antibodies (HCAbs). Although HCAbs were discovered over 30 years ago, the antibody gene repertoire of Bactrian camels remains largely underexplored. To characterize the diversity of variable genes of HCAbs (VHHs), germline and rearranged VHH repertoires are constructed. Phylogenetics analysis shows that all camelid VHH genes are derived from a common ancestor and the nucleotide diversity of VHHs is similar across all camelid species. While species-specific hallmark sites are identified, the non-canonical cysteines specific to VHHs are distinct in Bactrian camels and dromedaries compared with alpacas. Though low divergence at the germline repertoire between wild and domestic Bactrian camels, higher expression of VHHs is observed in some wild Bactrian camels than that of domestic ones. This study not only adds our understanding of VHH repertoire diversity across camelids, but also provides useful resources for HCAb engineering.
Letter to the editor
Actin polymerization induces mitochondrial distribution during collective cell migration
Chen Qu, Yating Kan, Hui Zuo, Mengqi Wu, Zhixiang Dong, Xinyi Wang, Qing Zhang, Heng Wang, Dou Wang, Jiong Chen
2023, 50(1): 46-49. doi: 10.1016/j.jgg.2022.04.014
Abstract (267) PDF (19)
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AMPK controls sucrose taste sensitization in Drosophila
Yun Hu, Zhi-Ying Liu, Sha-Sha Li, An-Qi Li, Qiao-Ping Wang
2023, 50(1): 50-53. doi: 10.1016/j.jgg.2022.04.015
Abstract (276) PDF (16)
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TMEM181: a key mediator of cytolethal distending toxin required for Wnt signaling activity
Jiannan Zhang, Xueqin Yang, Shicheng Zhu, Zhong-Min Dai, Xiao-Jing Zhu
2023, 50(1): 54-57. doi: 10.1016/j.jgg.2022.04.016
Abstract (303) PDF (21)
Abstract:
The archaeogenomic validation of Saint Ladislaus' relic provides insights into the Árpád dynasty's genealogy
Gergely I. B. Varga, Lilla Alida Kristóf, Kitti Maár, Luca Kis, Oszkár Schütz, Orsolya Váradi, Bence Kovács, Alexandra Gînguţǎ, Balázs Tihanyi, Péter L. Nagy, Zoltán Maróti, Emil Nyerki, Tibor Török, Endre Neparáczki
2023, 50(1): 58-61. doi: 10.1016/j.jgg.2022.06.008
Abstract (793) PDF (124)
Abstract: