5.9
CiteScore
5.9
Impact Factor

Current Issue

2023 Vol. 50, No. 9

Display Method:
Review
Spatially resolved transcriptomics: a comprehensive review of their technological advances, applications, and challenges
Mengnan Cheng, Yujia Jiang, Jiangshan Xu, Alexios-Fotios A. Mentis, Shuai Wang, Huiwen Zheng, Sunil Kumar Sahu, Longqi Liu, Xun Xu
2023, 50(9): 625-640. doi: 10.1016/j.jgg.2023.03.011
Abstract (807) PDF (76)
Abstract:
The ability to explore life kingdoms is largely driven by innovations and breakthroughs in technology, from the invention of the microscope 350 years ago to the recent emergence of single-cell sequencing, by which the scientific community has been able to visualize life at an unprecedented resolutio...
Laser capture microdissection for biomedical research: towards high-throughput, multi-omics, and single-cell resolution
Wenbo Guo, Yining Hu, Jingyang Qian, Lidan Zhu, Junyun Cheng, Jie Liao, Xiaohui Fan
2023, 50(9): 641-651. doi: 10.1016/j.jgg.2023.07.011
Abstract (513) PDF (208)
Abstract:
Spatial omics technologies have become powerful methods to provide valuable insights into cells and tissues within a complex context, significantly enhancing our understanding of the intricate and multifaceted biological system. With an increasing focus on spatial heterogeneity, there is a growing n...
Original research
Improved in situ sequencing for high-resolution targeted spatial transcriptomic analysis in tissue sections
Xinbin Tang, Jiayu Chen, Xinya Zhang, Xuzhu Liu, Zhaoxiang Xie, Kaipeng Wei, Jianlong Qiu, Weiyan Ma, Chen Lin, Rongqin Ke
2023, 50(9): 652-660. doi: 10.1016/j.jgg.2023.02.004
Abstract (508) PDF (31)
Abstract:
Spatial transcriptomics enables the study of localization-indexed gene expression activity in tissues, providing the transcriptional landscape that in turn indicates the potential regulatory networks of gene expression. In situ sequencing (ISS) is a targeted spatial transcriptomic technique, based o...
Divergent expression of Neurl3 from hemogenic endothelial cells to hematopoietic stem progenitor cells during development
Xiaowei Ning, Junjie Du, Yandong Gong, Yingpeng Yao, Zhijie Bai, Yanli Ni, Yanyan Li, Zongcheng Li, Haixin Zhao, Jie Zhou, Bing Liu, Yu Lan, Siyuan Hou
2023, 50(9): 661-675. doi: 10.1016/j.jgg.2023.05.006
Abstract (382) PDF (31)
Abstract:
Prior to the generation of hematopoietic stem cells (HSCs) from the hemogenic endothelial cells (HECs) mainly in the dorsal aorta in midgestational mouse embryos, multiple hematopoietic progenitors including erythro-myeloid progenitors and lymphoid progenitors are generated from yolk sac HECs. These...
Single-cell RNA-Seq reveals transcriptional regulatory networks directing the development of mouse maxillary prominence
Jian Sun, Yijun Lin, Nayoung Ha, Jianfei Zhang, Weiqi Wang, Xudong Wang, Qian Bian
2023, 50(9): 676-687. doi: 10.1016/j.jgg.2023.02.008
Abstract (410) PDF (26)
Abstract:
During vertebrate embryonic development, neural crest-derived ectomesenchyme within the maxillary prominences undergoes precisely coordinated proliferation and differentiation to give rise to diverse craniofacial structures, such as tooth and palate. However, the transcriptional regulatory networks ...
Microbiota-mediated shaping of mouse spleen structure and immune function characterized by scRNA-seq and Stereo-seq
Yin Zhang, Juan Shen, Wei Cheng, Bhaskar Roy, Ruizhen Zhao, Tailiang Chai, Yifei Sheng, Zhao Zhang, Xueting Chen, Weiming Liang, Weining Hu, Qijun Liao, Shanshan Pan, Wen Zhuang, Yangrui Zhang, Rouxi Chen, Junpu Mei, Hong Wei, Xiaodong Fang
2023, 50(9): 688-701. doi: 10.1016/j.jgg.2023.04.012
Abstract (610) PDF (61)
Abstract:
Gut microbes exhibit complex interactions with their hosts and shape an organism's immune system throughout its lifespan. As the largest secondary lymphoid organ, the spleen has a wide range of immunological functions. To explore the role of microbiota in regulating and shaping the spleen, we employ...
Single-cell transcriptomic analysis identifies a highly replicating Cd168+ skeletal stem/progenitor cell population in mouse long bones
Rui-Cong Hao, Zhi-Ling Li, Fei-Yan Wang, Jie Tang, Pei-Lin Li, Bo-Feng Yin, Xiao-Tong Li, Meng-Yue Han, Ning Mao, Bing Liu, Li Ding, Heng Zhu
2023, 50(9): 702-712. doi: 10.1016/j.jgg.2023.04.004
Abstract (615) PDF (26)
Abstract:
Skeletal stem/progenitor cells (SSPCs) are tissue-specific stem/progenitor cells localized within skeletons and contribute to bone development, homeostasis, and regeneration. However, the heterogeneity of SSPC populations in mouse long bones and their respective regenerative capacity remain to be fu...
Method
VT3D: a visualization toolbox for 3D transcriptomic data
Lidong Guo, Yao Li, Yanwei Qi, Zhi Huang, Kai Han, Xiaobin Liu, Xin Liu, Mengyang Xu, Guangyi Fan
2023, 50(9): 713-719. doi: 10.1016/j.jgg.2023.04.001
Abstract (593) PDF (19)
Abstract:
Data visualization empowers researchers to communicate their results that support scientific reasoning in an intuitive way. Three-dimension (3D) spatially resolved transcriptomic atlases constructed from multi-view and high-dimensional data have rapidly emerged as a powerful tool to unravel spatial ...
Integrating multi-modal information to detect spatial domains of spatial transcriptomics by graph attention network
Yuying Huo, Yilang Guo, Jiakang Wang, Huijie Xue, Yujuan Feng, Weizheng Chen, Xiangyu Li
2023, 50(9): 720-733. doi: 10.1016/j.jgg.2023.06.005
Abstract (359) PDF (22)
Abstract:
Recent advances in spatially resolved transcriptomic technologies have enabled unprecedented opportunities to elucidate tissue architecture and function in situ. Spatial transcriptomics can provide multimodal and complementary information simultaneously, including gene expression profiles, spatial l...