Chen, N., Zhou, M., Dong, X., Qu, J., Gong, F., Han, Y., Qiu, Y., Wang, J., Liu, Y., Wei, Y., 2020. Epidemiological and clinical characteristics of 99 cases of 2019 novel coronavirus pneumonia in Wuhan, China: a descriptive study. Lancet 395, 507-513.
|
Chiara, M., D'Erchia, A.M., Gissi, C., Manzari, C., Parisi, A., Resta, N., Zambelli, F., Picardi, E., Pavesi, G., Horner, D.S., 2021. Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities. Brief Bioinf. 22, 616-630.
|
Cuadrado-Payán, E., Montagud-Marrahi, E., Torres-Elorza, M., Bodro, M., Blasco, M., Poch, E., Soriano, A., Piñeiro, G.J., 2020. SARS-CoV-2 and influenza virus co-infection. Lancet 395, e84.
|
Di, L., Fu, Y., Sun, Y., Li, J., Liu, L., Yao, J., Wang, G., Wu, Y., Lao, K., Lee, R.W., 2020. RNA sequencing by direct tagmentation of RNA/DNA hybrids. Proc. Natl. Acad. Sci. U. S. A. 117, 2886-2893.
|
Hashemi, S.A., Safamanesh, S., Ghasemzadeh-Moghaddam, H., Ghafouri, M., Azimian, A., 2021. High prevalence of SARS-CoV-2 and influenza A virus (H1N1) coinfection in dead patients in Northeastern Iran. J. Med. Virol. 93, 1008-1012.
|
Kim, D., Quinn, J., Pinsky, B., Shah, N.H., Brown, I., 2020. Rates of Co-infection between SARS-CoV-2 and other respiratory pathogens. JAMA 323, 2085-2086.
|
Lansbury, L., Lim, B., Baskaran, V., Lim, W.S., 2020. Co-infections in people with COVID-19: a systematic review and meta-analysis. J. Infect. 81, 266-275.
|
Li, F., Kaczor-Urbanowicz, K.E., Sun, J., Majem, B., Lo, H.C., Kim, Y., Koyano, K., Rao, S.L., Kang, S.Y., Kim, S.M., 2018. Characterization of human salivary extracellular RNA by next-generation sequencing. Clin. Chem. 64, 1085-1095.
|
Lu, B., Dong, L., Yi, D., Zhang, M., Zhu, C., Li, X., Yi, C., 2020. Transposase-assisted tagmentation of RNA/DNA hybrid duplexes. Elife 9, e54919.
|
Majorek, K.A., Dunin-Horkawicz, S., Steczkiewicz, K., Muszewska, A., Nowotny, M., Ginalski, K., Bujnicki, J.M., 2014. The RNase H-like superfamily: new members, comparative structural analysis and evolutionary classification. Nucleic Acids Res. 42, 4160-4179.
|
Soler Rich, R., Rius Tarruella, J., Melgosa Camarero, M.T., 2020. Expanded mesenchymal stem cells: a novel therapeutic approach for SARS-CoV-2 pneumonia (COVID-19). Concepts regarding a first case in Spain. Med. Clin. (Engl Ed) 155, 318-319.
|
Verma, D., Church, T.M., Swaminathan, S., 2021. Epstein-barr virus lytic replication induces ACE2 expression and enhances SARS-CoV-2 pseudotyped virus entry in epithelial cells. J. Virol. 95, e0019221.
|
Wylie, T.N., Wylie, K.M., Herter, B.N., Storch, G.A., 2015. Enhanced virome sequencing using targeted sequence capture. Genome Res. 25, 1910-1920.
|
Xiao, M., Liu, X., Ji, J., Li, M., Li, J., Yang, L., Sun, W., Ren, P., Yang, G., Zhao, J., 2020. Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples. Genome Med. 12, 57.
|
Xu, Y., Kang, L., Shen, Z., Li, X., Wu, W., Ma, W., Fang, C., Yang, F., Jiang, X., Gong, S., 2020. Dynamics of severe acute respiratory syndrome coronavirus 2 genome variants in the feces during convalescence. J. Genet. Genom. 47, 610-617.
|
Youngs, J., Wyncoll, D., Hopkins, P., Arnold, A., Ball, J., Bicanic, T., 2020. Improving antibiotic stewardship in COVID-19: bacterial co-infection is less common than with influenza. J. Infect. 81, e55-e57.
|
Zhou, F., Yu, T., Du, R., Fan, G., Liu, Y., Liu, Z., Xiang, J., Wang, Y., Song, B., Gu, X., 2020. Clinical course and risk factors for mortality of adult inpatients with COVID-19 in Wuhan, China: a retrospective cohort study. Lancet 395, 1054-1062.
|
Zhou, X., Wang, H., Ji, Q., Du, M., Liang, Y., Li, H., Li, F., Shang, H., Zhu, X., Wang, W., 2021. Molecular deconvolution of the neutralizing antibodies induced by an inactivated SARS-CoV-2 virus vaccine. Protein Cell 10.1007/s13238-021-00840-z.
|
[1] | Min Chen, Shihua Li, Shujun Liu, Yuhang Zhang, Xiuhong Cui, Limin Lv, Bowen Liu, Aihua Zheng, Qihui Wang, Shuguang Duo, Fei Gao. Infection of SARS-CoV-2 causes severe pathological changes in mouse testis[J]. Journal of Genetics and Genomics, 2023, 50(2): 99-107. doi: 10.1016/j.jgg.2022.11.011 |
[2] | Shilei Zhao, Yali Hou, Xiaolong Zhang, Alice Hughes, Na Liu, Minsheng Peng, Qihui Wang, Yongbiao Xue, Hua Chen. Pinpointing the animal origins of SARS-CoV-2: a genomic approach[J]. Journal of Genetics and Genomics, 2022, 49(9): 900-902. doi: 10.1016/j.jgg.2022.05.002 |
[3] | Feifei Chen, Lei Guo, Jiehui Di, Man Li, Dong Dong, Dongsheng Pei. Circular RNA ubiquitin-associated protein 2 enhances autophagy and promotes colorectal cancer progression and metastasis via miR-582-5p/FOXO1 signaling[J]. Journal of Genetics and Genomics, 2021, 48(12): 1091-1103. doi: 10.1016/j.jgg.2021.07.017 |
[4] | Xiaolu Hu, Yan Li, Tianfang Zhang, Lin Li, She Chen, Xiaohong Wu, Haijun Li, Binjie Qi, Zuobing Chen. Phosphorylation of Ago2 is required for its role in DNA doublestrand break repair[J]. Journal of Genetics and Genomics, 2021, 48(4): 333-340. doi: 10.1016/j.jgg.2021.03.011 |
[5] | Paul D. Hartley, Richard L. Tillett, David P. AuCoin, Joel R. Sevinsky, Yanji Xu, Andrew Gorzalski, Mark Pandori, Erin Buttery, Holly Hansen, Michael A. Picker, Cyprian C. Rossetto, Subhash C. Verma. Genomic surveillance of Nevada patients revealed prevalence of unique SARS-CoV-2 variants bearing mutations in the RdRp gene[J]. Journal of Genetics and Genomics, 2021, 48(1): 40-51. doi: 10.1016/j.jgg.2021.01.004 |
[6] | Rong Li, Jun Liu, Hui Zhang. The challenge of emerging SARS-CoV-2 mutants to vaccine development[J]. Journal of Genetics and Genomics, 2021, 48(2): 102-106. doi: 10.1016/j.jgg.2021.03.001 |
[7] | Changshuo Wei, Ke-Jia Shan, Weiguang Wang, Shuya Zhang, Qing Huan, Wenfeng Qian. Evidence for a mouse origin of the SARS-CoV-2 Omicron variant[J]. Journal of Genetics and Genomics, 2021, 48(12): 1111-1121. doi: 10.1016/j.jgg.2021.12.003 |
[8] | Zhihui Zhang, Chengchao Wu, Khaista Rahman, Weize Xu, Guoliang Li, Da Lin, Gang Cao. Robust capturing chromosome conformation using the DLO Hi-C 2.0 method[J]. Journal of Genetics and Genomics, 2020, 47(10): 655-658. doi: 10.1016/j.jgg.2020.11.003 |
[9] | Haojie Sun, Jingjing Song, Jia Lei, Xinying Song, Keli Dai, Jin Xiao, Chunxia Yuan, Shengmin An, Haiyan Wang, Xiue Wang. Construction and application of oligo-based FISH karyotype of Haynaldia villosa[J]. Journal of Genetics and Genomics, 2018, 45(8): 463-466. doi: 10.1016/j.jgg.2018.06.004 |
[10] | Chuanbo Huang, Weili Yang, Junpei Wang, Yuan Zhou, Bin Geng, Georgios Kararigas, Jichun Yang, Qinghua Cui. The DrugPattern tool for drug set enrichment analysis and its prediction for beneficial effects of oxLDL on type 2 diabetes[J]. Journal of Genetics and Genomics, 2018, 45(7): 389-397. doi: 10.1016/j.jgg.2018.07.002 |
[11] | Lihong Chen, Bo Liu, Zhiqiang Wu, Qi Jin, Jian Yang. DRodVir: A resource for exploring the virome diversity in rodents[J]. Journal of Genetics and Genomics, 2017, 44(5): 259-264. doi: 10.1016/j.jgg.2017.04.004 |
[12] | Suhong Xu. The Application of CRISPR-Cas9 Genome Editing in Caenorhabditis elegans[J]. Journal of Genetics and Genomics, 2015, 42(8): 413-421. doi: 10.1016/j.jgg.2015.06.005 |
[13] | Hongning Tong, Chengcai Chu. Brassinosteroid Signaling and Application in Rice[J]. Journal of Genetics and Genomics, 2012, 39(1): 3-9. doi: 10.1016/j.jgg.2011.12.001 |
[14] | Bo Liu, Chuan Wang, Haihua Yang, Huarong Tan. Establishment of a Genetic Transformation System and Its Application in Thermoanaerobacter tengcongensis[J]. Journal of Genetics and Genomics, 2012, 39(10): 561-570. doi: 10.1016/j.jgg.2012.07.003 |
[15] | Yanfei Ren, Jun Lv, Hua Wang, Linchuan Li, Yufa Peng, Li-Jia Qu. A comparative proteomics approach to detect unintended effects in transgenic Arabidopsis[J]. Journal of Genetics and Genomics, 2009, 36(10): 629-639. doi: 10.1016/S1673-8527(08)60155-1 |
[16] | Yang Xiang, Yumei Li, Zaiming Liu, Zhenqiu Sun. The application of the entropy-based statistic for genomic association study of QTL[J]. Journal of Genetics and Genomics, 2008, 35(3): 183-188. doi: 10.1016/S1673-8527(08)60025-9 |
[17] | Fengyu Zhang, Diane Wagener. An approach to incorporate linkage disequilibrium structure into genomic association analysis[J]. Journal of Genetics and Genomics, 2008, 35(6): 381-385. doi: 10.1016/S1673-8527(08)60055-7 |
[18] | Tianxin Sheng, Kangjuan Yang. Adiponectin and its association with insulin resistance and type 2 diabetes[J]. Journal of Genetics and Genomics, 2008, 35(6): 321-326. doi: 10.1016/S1673-8527(08)60047-8 |
[19] | Dongmei Yin, Dangqun Cui, Bin Jia. Construction of a High-efficient Expression Vector of Δ12 Fatty Acid Desaturase in Peanut and Its Prokaryotical Expression[J]. Journal of Genetics and Genomics, 2007, 34(1): 81-88. doi: 10.1016/S1673-8527(07)60009-5 |
[20] | Jian Zhong, Hongbin Wang, Dangquan Zhang, Bing Liu, Jinfa Wang. Rice Repetitive DNA Sequence RRD3: a Plant Promoter and Its Application to RNA Interference[J]. Journal of Genetics and Genomics, 2007, 34(3): 258-266. doi: 10.1016/S1673-8527(07)60027-7 |
1. | Shiwa Y., Baba T., Sierra M.A. et al. Evaluation of rRNA depletion methods for capturing the RNA virome from environmental surfaces. BMC Research Notes, 2023, 16 doi:10.1186/s13104-023-06417-9 | |
2. | Zhang M., Chen Z., Zhou J. et al. An imported human case with the SARS-CoV-2 Omicron subvariant BA.2.75 in Yunnan Province, China. Biosafety and Health, 2022, 4: 406-409. doi:10.1016/j.bsheal.2022.10.003 |