Analysis of Genetic Effects of Nuclear-Cytoplasmic Interaction on Quantitative Traits: Genetic Model for Diploid Plants

Lide Han^{a, b},
Jian Yang^a,
Jun Zhu^{a
, ,}

a.
Institute of Bioinformatics, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310029, China
b.
College of Agronomy, Anhui Agricultural University, Hefei 230036, China

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Corresponding author: E-mail address: jzhu@zju.edu.cn (Jun Zhu)

摘要

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Abstract: A genetic model was proposed for simultaneously analyzing genetic effects of nuclear, cytoplasm, and nuclear-cytoplasmic interaction (NCI) as well as their genotype by environment (GE) interaction for quantitative traits of diploid plants. In the model, the NCI effects were further partitioned into additive and dominance nuclear-cytoplasmic interaction components. Mixed linear model approaches were used for statistical analysis. On the basis of diallel cross designs, Monte Carlo simulations showed that the genetic model was robust for estimating variance components under several situations without specific effects. Random genetic effects were predicted by an adjusted unbiased prediction (AUP) method. Data on four quantitative traits (boll number, lint percentage, fiber length, and micronaire) in Upland cotton (Gossypium hirsutum L.) were analyzed as a worked example to show the effectiveness of the model.
- Plants traits /
- genetic model /
- nuclear-cytoplasmic interaction effects /
- genetic prediction

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参考文献(20)

[1]	Leon, P, Arroyo, et al. Nuclear control of plastid and mitochondrial development in higher plants Annu Rev Plant Physiol Plant Mol Biol., 49 (1998),pp. 453-480
[2]	Strand, A Plastid-to-nucleus signalling Curr Opin Plant Biol., 7 (2004),pp. 621-625
[3]	Nott, A, Jung, et al. Plastid-to-nucleus retrograde signaling Annu Rev Plant Biol., 57 (2006),pp. 739-759
[4]	Scotti, N, Monti, et al. Organelle DNA variation in parental Solanum spp genotypes and nuclearcytoplasmic interactions in Solanum tuberosum (+) S. commersonii somatic hybrid-backcross progeny Theor Appl Genet, 108 (2004),pp. 87-94
[5]	Tao, D, Hu, et al. Cytoplasm and cytoplasm-nucleus interactions affect agronomic traits in japonica rice Euphytica, 135 (2004),pp. 129-134
[6]	Gregorius, HR, Ross, et al. Selection with gene-cytoplasm interactions. I Maintenance of cytoplasm polymorphisms Genetics, 107 (1984),pp. 165-178
[7]	Beavis, WD, Pollak, et al. A theoretical model for quantitatively inherited traits influenced by nuclearcytoplasmic interaction Theor Appl Genet, 74 (1987),pp. 571-578
[8]	Mosjidis, JA, Waines, et al. Methods for the study of cytoplasmic effects on quantitative traits Theor Appl Genet, 77 (1989),pp. 195-199
[9]	Yang, RC, Lu, et al. A study on effects of nucleo-cytoplasmic interaction in Oryza L. Scientia Agricultura Sinca, 22 (1989),pp. 56-63
[10]	Falconer, DS, Mackay Trudy, et al.
[11]	Rao, CR Estimation of variance and covariance components MINQUE theory J Multivar Anal., 1 (1971),pp. 257-275
[12]	Zhu, J, Weir, et al. Mixed model approaches for diallel analysis based on a bio-model Genet Res., 68 (1996),pp. 233-240
[13]	Peng, YH, Yang, et al. Characteristic analysis of a planting time-sensitive male sterile soybean Acta Agronomic Sinica, 24 (1998),pp. 1010-1013
[14]	Goloenko, IM, Lukhanina, et al. The productivity characteristics of substituted barley lines with marked chloroplast and mitochondrial genomes Cell Mol Biol Lett., 7 (2002),pp. 483-491
[15]	Rao, AP, Fleming, et al. Cytoplasmic-genetypic effect in the GT 112 maize inbred with four cytoplasms Crop Sci., 18 (1978),pp. 935-937
[16]	Murai, K, Takumi, et al. Pistillody, homoeotic transformation of stamens into pistil-like structures, caused by nuclear-cytoplasmic interaction in wheat Plant J., 29 (2002),pp. 169-181
[17]	Cockerham, CC, Weir, et al. Quadratic analysis of reciprocal crosses Biometrics, 33 (1977),pp. 187-203
[18]	Eijlander, R, Laak, et al. Occurrence of self-compatibility, selfincompatibility and unilateral incompatibility after crossing diploid S. tuberosum (SI) with S. verrucosum (SC): I Expression and inheritance of self-compatibility Euphytica, 115 (2000),pp. 127-139
[19]	Schnable, PS, Wise, et al. The molecular basis of cytoplasmic male sterility and fertility restoration Trends Plant Sci., 3 (1998),pp. 175-180
[20]	Touzet, P, Hueber, et al. Genetic analysis of male fertility restoration in wild cytoplasmic male sterility G of beet Theor Appl Genet, 109 (2004),pp. 240-247