The many roles of small RNAs in leaf development

Catherine A. Kidner^,

Institute of Molecular Plant Sciences, University of Edinburgh, King's Buildings, Mayfield Road Edinburgh, EH9 3JR Royal Botanic Gardens, Edinburgh, 20a Inverleith Row, Edinburgh EH3 5LR, UK

More Information

Corresponding author: E-mail address: catherine.kidner@ed.ac.uk (Catherine A. Kidner)

摘要

- /
- /
Abstract: Leaf development involves many complex genetic interactions, signals between adjacent cells or between more distant tissues and consequent changes in cell fate. This review describes three stages in leaf development where regulation by small RNAs have been used to modulate gene expression patterns.
- miRNA /
- ta-siRNA /
- leaf development

HTML全文

参考文献(84)

[1]	Adenot, X., Elmayan, T., Lauressergues, D. et al. Curr. Biol., 16 (2006),pp. 927-932
[2]	Aida, M., Ishida, T., Tasaka, M. Development, 126 (1999),pp. 1563-1570
[3]	Allen, E., Xie, Z., Gustafson, A.M. et al. Cell, 121 (2005),pp. 207-221
[4]	Baker, C.C., Sieber, P., Wellmer, F. et al. Curr. Biol., 15 (2005),pp. 303-315
[5]	Bao, N., Lye, K.W., Barton, M.K. Dev. Cell, 7 (2004),pp. 653-662
[6]	Barkoulas, M., Hay, A., Kougioumoutzi, E. et al. Nat. Genet., 40 (2008),pp. 1136-1141
[7]	Bartel, D.P., Chen, C.Z. Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs Nat. Rev. Genet., 5 (2004),pp. 396-400
[8]	Berger, Y., Harpaz-Saad, S., Brand, A. et al. The NAC-domain transcription factor GOBLET specifies leaflet boundaries in compound tomato leaves Development, 136 (2009),pp. 823-832
[9]	Blein, T., Pulido, A., Vialette-Guiraud, A. et al. A conserved molecular framework for compound leaf development Science, 322 (2008),pp. 1835-1839
[10]	Brodersen, P., Voinnet, O. Revisiting the principles of microRNA target recognition and mode of action Nat. Rev. Mol. Cell Biol., 10 (2009),pp. 141-148
[11]	Brodersen, P., Sakvarelidze-Achard, L., Bruun-Rasmussen, M. et al. Widespread translational inhibition by plant miRNAs and siRNAs Science, 320 (2008),pp. 1185-1190
[12]	, Strable, J., Zhang, X., Ohtsu, K. et al. Microdissection of shoot meristem functional domains PLoS Genet., 5 (2009),p. e1000476
[13]	Chitwood, D.H., Nogueira, F.T., Howell, M.D. et al. Pattern formation via small RNA mobility Genes Dev., 23 (2009),pp. 549-554
[14]	Cubas, P., Lauter, N., Doebley, J. et al. The TCP domain: a motif found in proteins regulating plant growth and development Plant J., 18 (1999),pp. 215-222
[15]	Fahlgren, N., Montgomery, T.A., Howell, M.D. et al. Curr. Biol., 16 (2006),pp. 939-944
[16]	Garcia, D., Collier, S.A., Byrne, M.E. et al. Curr. Biol., 16 (2006),pp. 933-938
[17]	Guo, H.S., Xie, Q., Fei, J.F. et al. MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for arabidopsis lateral root development Plant Cell, 17 (2005),pp. 1376-1386
[18]	Heisler, M.G., Ohno, C., Das, P. et al. Curr. Biol., 15 (2005),pp. 1899-1911
[19]	Hornstein, E., Shomron, N. Canalization of development by microRNAs Nat. Genet., 38 (2006),pp. S20-S24
[20]	Hunter, C., Willmann, M.R., Wu, G. et al. Development, 133 (2006),pp. 2973-2981
[21]	Husbands, A.Y., Chitwood, D.H., Plavskin, Y, Timmermans, M.C. Signals and prepatterns: new insights into organ polarity in plants Genes Dev., 23 (2009),pp. 1986-1997
[22]	Juarez, M.T., Kui, J.S., Thomas, J. et al. microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity Nature, 428 (2004),pp. 84-88
[23]	Juarez, M.T., Twigg, R.W., Timmermans, M.C. Specification of adaxial cell fate during maize leaf development Development, 131 (2004),pp. 4533-4544
[24]	Jung, J.H., Park, C.M. Planta, 225 (2007),pp. 1327-1338
[25]	Kasschau, K.D., Xie, Z., Allen, E. et al. Dev. Cell, 4 (2003),pp. 205-217
[26]	Kidner, C.A., Martienssen, R.A. Spatially restricted microRNA directs leaf polarity through ARGONAUTE1 Nature, 428 (2004),pp. 81-84
[27]	Kidner, C.A., Timmermans, M.C. Mixing and matching pathways in leaf polarity Curr. Opin. Plant Biol., 10 (2007),pp. 13-20
[28]	Kidner, C.A., Umbreen, S.U. Why is leaf shape so variable International Journal of Plant Development, 3 (2010)
[29]	Koenig, D., Bayer, E., Kang, J. et al. Development, 136 (2009),pp. 2997-3006
[30]	Koyama, T., Furutani, M., Tasaka, M. et al. Plant Cell, 19 (2007),pp. 473-484
[31]	Kutter, C., Schob, H., Stadler, M. et al. Plant Cell, 19 (2007),pp. 2417-2429
[32]	Lanet, E., Delannoy, E., Sormani, R. et al. Plant Cell, 21 (2009),pp. 1762-1768
[33]	Laufs, P., Peaucelle, A., Morin, H. et al. Development, 131 (2004),pp. 4311-4322
[34]	Levine, E., McHale, P., Levine, H. Small regulatory RNAs may sharpen spatial expression patterns PLoS Comput. Biol., 3 (2007),p. e233
[35]	Li, H., Xu, L., Wang, H. et al. Plant Cell, 17 (2005),pp. 2157-2171
[36]	Liu, D., Song, Y., Chen, Z. et al. Physiol. Plant, 136 (2009),pp. 223-236
[37]	Liu, Q., Yao, X., Pi, L. et al. Plant J., 58 (2008),pp. 27-40
[38]	Mallory, A.C., Dugas, D.V., Bartel, D.P. et al. MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs Curr. Biol., 14 (2004),pp. 1035-1046
[39]	McConnell, J.R., Emery, J., Eshed, Y. et al. Nature, 411 (2001),pp. 709-713
[40]	Montgomery, T.A., Howell, M.D., Cuperus, J.T. et al. Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation Cell, 133 (2008),pp. 128-141
[41]	Nagasaki, H., Itoh, J., Hayashi, K. et al. The small interfering RNA production pathway is required for shoot meristem initiation in rice Proc. Natl. Acad. Sci. USA, 104 (2007),pp. 14867-14871
[42]	Nath, U., Crawford, B.C., Carpenter, R. et al. Genetic control of surface curvature Science, 299 (2003),pp. 1404-1407
[43]	Newman, K.L., Fernandez, A.G., Barton, M.K. Plant Cell, 14 (2002),pp. 3029-3042
[44]	Nikovics, K., Blein, T., Peaucelle, A. et al. Plant Cell, 18 (2006),pp. 2929-2945
[45]	Nogueira, F.T., Madi, S., Chitwood, D.H. et al. Two small regulatory RNAs establish opposing fates of a developmental axis Genes Dev., 21 (2007),pp. 750-755
[46]	Nogueira, F.T., Chitwood, D.H., Madi, S. et al. Regulation of small RNA accumulation in the maize shoot apex PLoS Genet., 5 (2009),p. e1000320
[47]	Ori, N., Cohen, A.R., Etzioni, A. et al. Nat. Genet., 39 (2007),pp. 787-791
[48]	Otsuga, D., DeGuzman, B., Prigge, M.J. et al. Plant J., 25 (2001),pp. 223-236
[49]	Palatnik, J.F., Allen, E., Wu, X. et al. Control of leaf morphogenesis by microRNAs Nature, 425 (2003),pp. 257-263
[50]	Palatnik, J.F., Wollmann, H., Schommer, C. et al. Dev. Cell, 13 (2007),pp. 115-125
[51]	Pekker, I., Alvarez, J.P., Eshed, Y. Plant Cell, 17 (2005),pp. 2899-2910
[52]	Peragine, A., Yoshikawa, M., Wu, G. et al. Genes Dev., 18 (2004),pp. 2368-2379
[53]	Raman, S., Greb, T., Peaucelle, A. et al. Plant J., 55 (2008),pp. 65-76
[54]	Reinhardt, D., Frenz, M., Mandel, T. et al. Microsurgical and laser ablation analysis of leaf positioning and dorsoventral patterning in tomato Development, 132 (2005),pp. 15-26
[55]	Reinhardt, D., Pesce, E.R., Stieger, P. et al. Regulation of phyllotaxis by polar auxin transport Nature, 426 (2003),pp. 255-260
[56]	Reinhart, B.J., Weinstein, E.G., Rhoades, M.W. et al. MicroRNAs in plants Genes Dev., 16 (2002),pp. 1616-1626
[57]	Rhoades, M.W., Reinhart, B.J., Lim, L.P. et al. Prediction of plant microRNA targets Cell, 110 (2002),pp. 513-520
[58]	Schommer, C., Palatnik, J.F., Aggarwal, P. et al. PLoS Biol., 6 (2008),p. e230
[59]	Schwab, R., Ossowski, S., Riester, M. et al. Plant Cell, 18 (2006),pp. 1121-1133
[60]	Schwab, R., Maizel, A., Ruiz-Ferrer, V. et al. PLoS One, 4 (2009),p. e5980
[61]	Sessions, A., Nemhauser, J.L., McColl, A. et al. Development, 124 (1997),pp. 4481-4491
[62]	Sieber, P., Wellmer, F., Gheyselinck, J. et al. Redundancy and specialization among plant microRNAs: Role of the MIR164 family in developmental robustness Development, 134 (2007),pp. 1051-1060
[63]	Souer, E., van Houwelingen, A., Kloos, D. et al. Cell, 85 (1996),pp. 159-170
[64]	Steeves, T.A., Sussex, I.M.
[65]	Sussex, I.M. Phytomorphlogy, 5 (1955),pp. 253-273
[66]	Takada, S., Hibara, K., Ishida, T. et al. Development, 128 (2001),pp. 1127-1135
[67]	Talbert, P.B., Adler, H.T., Parks, D.W. et al. Development, 121 (1995),pp. 2723-2735
[68]	Tiwari, S.B., Hagen, G., Guilfoyle, T. The roles of auxin response factor domains in auxin-responsive transcription Plant Cell, 15 (2003),pp. 533-543
[69]	Ulmasov, T., Hagen, G., Guilfoyle, T.J. Activation and repression of transcription by auxin-response factors Proc. Natl. Acad. Sci. USA, 96 (1999),pp. 5844-5849
[70]	Ulmasov, T., Hagen, G., Guilfoyle, T.J. Dimerization and DNA binding of auxin response factors Plant J., 19 (1999),pp. 309-319
[71]	Usami, T., Horiguchi, G., Yano, S. et al. Development, 136 (2009),pp. 955-964
[72]	Voinnet, O. Origin, biogenesis, and activity of plant microRNAs Cell, 136 (2009),pp. 669-687
[73]	Vroemen, C.W., Mordhorst, A.P., Albrecht, C. et al. Plant Cell, 15 (2003),pp. 1563-1577
[74]	Weir, I., Lu, J., Cook, H. et al. Development, 131 (2004),pp. 915-922
[75]	Wenkel, S., Emery, J., Hou, B.H. et al. Plant Cell, 19 (2007),pp. 3379-3390
[76]	Williams, L., Carles, C.C., Osmont, K.S. et al. Proc. Natl. Acad. Sci. USA, 102 (2005),pp. 9703-9708
[77]	Williams, L., Grigg, S.P., Xie, M. et al. Development, 132 (2005),pp. 3657-3668
[78]	Wu, F., Yu, L., Cao, W. et al. Plant Cell, 19 (2007),pp. 914-925
[79]	Wu, G., Park, M.Y., Conway, S.R. et al. Cell, 138 (2009),pp. 750-759
[80]	Zhang, J., Chen, R., Xiao, J. et al. J. Plant Res., 120 (2007),pp. 671-678
[81]	Zhong, R., Ye, Z.H. Plant Cell, 11 (1999),pp. 2139-2152
[82]	Zhong, R., Ye, Z.H. Plant Signal Behav., 2 (2007),pp. 351-353
[83]	Zhou, G.K., Kubo, M., Zhong, R. et al. Plant Cell Physiol., 48 (2007),pp. 391-404
[84]	Zimmermann, R., Werr, W. Plant Mol. Biol., 58 (2005),pp. 669-685