留言板

尊敬的读者、作者、审稿人, 关于本刊的投稿、审稿、编辑和出版的任何问题, 您可以本页添加留言。我们将尽快给您答复。谢谢您的支持!

姓名
邮箱
手机号码
标题
留言内容
验证码

MicroRNAs and Their Cross-Talks in Plant Development

Danfeng Jin Yue Wang Yuhua Zhao Ming Chen

Danfeng Jin, Yue Wang, Yuhua Zhao, Ming Chen. MicroRNAs and Their Cross-Talks in Plant Development[J]. Journal of Genetics and Genomics, 2013, 40(4): 161-170. doi: 10.1016/j.jgg.2013.02.003
Citation: Danfeng Jin, Yue Wang, Yuhua Zhao, Ming Chen. MicroRNAs and Their Cross-Talks in Plant Development[J]. Journal of Genetics and Genomics, 2013, 40(4): 161-170. doi: 10.1016/j.jgg.2013.02.003

doi: 10.1016/j.jgg.2013.02.003

MicroRNAs and Their Cross-Talks in Plant Development

More Information
    • 关键词:
    •  / 
    •  / 
    •  / 
    •  / 
    •  
    These authors contributed equally to this work.
  • [1] Achard, P., Herr, A., Baulcombe, D.C. et al. Modulation of floral development by a gibberellin-regulated microRNA Development, 131 (2004),pp. 3357-3365
    [2] Aida, M., Ishida, T., Fukaki, H. et al. Plant Cell, 9 (1997),pp. 841-857
    [3] Allen, R.S., Li, J., Stahle, M.I. et al. Proc. Natl. Acad. Sci. USA, 104 (2007),pp. 16371-16376
    [4] Axtell, M.J., Snyder, J.A., Bartel, D.P. Common functions for diverse small RNAs of land plants Plant Cell, 19 (2007),pp. 1750-1769
    [5] Baker, C.C., Sieber, P., Wellmer, F. et al. Curr. Biol., 15 (2005),pp. 303-315
    [6] Barakat, A., Sriram, A., Park, J. et al. BMC Genomics, 13 (2012),p. 481
    [7] Bian, H., Xie, Y., Guo, F. et al. New Phytol., 196 (2012),pp. 149-161
    [8] Blazquez, M.A., Green, R., Nilsson, O. et al. Plant Cell, 10 (1998),pp. 791-800
    [9] Boualem, A., Laporte, P., Jovanovic, M. et al. Plant J., 54 (2008),pp. 876-887
    [10] Branscheid, A., Sieh, D., Pant, B.D. et al. Expression pattern suggests a role of MiR399 in the regulation of the cellular response to local Pi increase during arbuscular mycorrhizal symbiosis Mol. Plant Microbe Interact., 23 (2010),pp. 915-926
    [11] Breakfield, N.W., Corcoran, D.L., Petricka, J.J. et al. Genome Res., 22 (2012),pp. 163-176
    [12] Carlsbecker, A., Lee, J.Y., Roberts, C.J. et al. Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate Nature, 465 (2010),pp. 316-321
    [13] Chellappan, P., Vanitharani, R., Fauquet, C.M. Proc. Natl. Acad. Sci. USA, 102 (2005),pp. 10381-10386
    [14] Chen, H., Li, Z., Xiong, L. A plant microRNA regulates the adaptation of roots to drought stress FEBS Lett., 586 (2012),pp. 1742-1747
    [15] Chen, X. Science, 303 (2004),pp. 2022-2025
    [16] Chen, X. Small RNAs and their roles in plant development Annu. Rev. Cell Dev. Biol., 25 (2009),pp. 21-44
    [17] Chen, X., Zhang, Z., Liu, D. et al. J. Integr. Plant Biol., 52 (2010),pp. 946-951
    [18] Chen, Z.H., Bao, M.L., Sun, Y.Z. et al. Plant Mol. Biol., 77 (2011),pp. 619-629
    [19] Combier, J.P., Frugier, F., De Billy, F. et al. Genes Dev., 20 (2006),pp. 3084-3088
    [20] Cubas, P., Lauter, N., Doebley, J. et al. The TCP domain: a motif found in proteins regulating plant growth and development Plant J., 18 (1999),pp. 215-222
    [21] Debernardi, J.M., Rodriguez, R.E., Mecchia, M.A. et al. Functional specialization of the plant miR396 regulatory network through distinct microRNA-target interactions PLoS Genet., 8 (2012),p. e1002419
    [22] Ding, D., Zhang, L., Wang, H. et al. Differential expression of miRNAs in response to salt stress in maize roots Ann. Bot., 103 (2009),pp. 29-38
    [23] Fahlgren, N., Howell, M.D., Kasschau, K.D. et al. PLoS ONE, 2 (2007),p. e219
    [24] Fujii, H., Chiou, T.J., Lin, S.I. et al. Curr. Biol., 15 (2005),pp. 2038-2043
    [25] Furuta, K., Lichtenberger, R., Helariutta, Y. The role of mobile small RNA species during root growth and development Curr. Opin. Cell Biol., 24 (2012),pp. 211-216
    [26] Gandikota, M., Birkenbbihl, R.P., Hohmann, S. et al. Plant J., 49 (2007),pp. 683-693
    [27] Gonzalez-Ibeas, D., Blanca, J., Donaire, L. et al. BMC Genomics, 12 (2011),p. 393
    [28] Guo, H.S., Xie, Q., Fei, J.F. et al. Plant Cell, 17 (2005),pp. 1376-1386
    [29] Gupta, O.P., Permar, V., Koundal, V. et al. Mol. Biol. Rep., 39 (2012),pp. 817-824
    [30] Hewezi, T., Maier, T.R., Nettleton, D. et al. Plant Physiol., 159 (2012),pp. 321-335
    [31] Jang, G., Yi, K., Pires, N.D. et al. RSL genes are sufficient for rhizoid system development in early diverging land plants Development, 138 (2011),pp. 2273-2281
    [32] Jofuku, K.D., Omidyar, P.K., Gee, Z. et al. Proc. Natl. Acad. Sci. USA, 102 (2005),pp. 3117-3122
    [33] Jung, J.H., Seo, P.J., Ahn, J.H. et al. J. Biol. Chem., 287 (2012),pp. 16007-16016
    [34] Jung, J.H., Seo, Y.H., Seo, P.J. et al. Plant Cell, 19 (2007),pp. 2736-2748
    [35] Katiyar, A., Smita, S., Chinnusamy, V. et al. Identification of miRNAs in sorghum by using bioinformatics approach Plant Signal Behav., 7 (2012),pp. 246-259
    [36] Kim, J., Jung, J.H., Reyes, J.L. et al. Plant J., 42 (2005),pp. 84-94
    [37] Kim, J.Y., Kwak, K.J., Jung, H.J. et al. Plant Cell Physiol., 51 (2010),pp. 1079-1083
    [38] Kiu, H.C., Sang, E.J., Young, K.L. et al. J. Plant Biol., 50 (2007),pp. 282-299
    [39] Koyama, T., Furutani, M., Tasaka, M. et al. Plant Cell, 19 (2007),pp. 473-484
    [40] Kristin, D., Kasschau, Z.X., Edwards, A. et al. Dev. Cell, 4 (2003),p. 13
    [41] Kutter, C., Schob, H., Stadler, M. et al. Plant Cell, 19 (2007),pp. 2417-2429
    [42] Laufs, P. Development, 131 (2004),pp. 4311-4322
    [43] Lauressergues, D., Delaux, P.M., Formey, D. et al. Plant J., 72 (2012),pp. 512-522
    [44] Lauter, N., Kampani, A., Carlson, S. et al. Proc. Natl. Acad. Sci. USA, 102 (2005),pp. 9412-9417
    [45] Li, H., Deng, Y., Wu, T. et al. Misexpression of miR482, miR1512, and miR1515 increases soybean nodulation Plant Physiol., 153 (2010),pp. 1759-1770
    [46] Li, Q., Jin, X., Zhu, Y.X. J. Genet. Genomics, 39 (2012),pp. 351-360
    [47] Li, W., Cui, X., Meng, Z. et al. Plant Physiol., 158 (2012),pp. 1279-1292
    [48] Liu, D., Song, Y., Chen, Z. et al. Physiol. Plant, 136 (2009),pp. 223-236
    [49] Liu, Q., Chen, Y.Q. Insights into the mechanism of plant development: interactions of miRNAs pathway with phytohormone response Biochem. Biophys. Res. Commun., 384 (2009),pp. 1-5
    [50] Liu, Z., Kumari, S., Zhang, L. et al. PLoS ONE, 7 (2012),p. e39786
    [51] Lu, S., Sun, Y.H., Chiang, V.L. Plant J., 55 (2008),pp. 131-151
    [52] Luo, Q.J., Mittal, A., Jia, F. et al. Plant Mol. Biol., 80 (2011),pp. 117-129
    [53] Maizel, A., Jouannet, V.
    [54] Mallory, A.C., Bartel, D.P., Bartel, B. Plant Cell, 17 (2005),pp. 1360-1375
    [55] Mallory, A.C., Dugas, D.V., Bartel, D.P. et al. MicroRNA regulation of NAC-domain targets is required for proper formation and separation of adjacent embryonic, vegetative, and floral organs Curr. Biol., 14 (2004),pp. 1035-1046
    [56] Mecchia, M.A., Debernardi, J.M., Rodriguez, R.E. et al. MicroRNA miR396 and RDR6 synergistically regulate leaf development Mech. Dev., 130 (2012),pp. 2-13
    [57] Miyashima, S., Koi, S., Hashimoto, T. et al. Development, 138 (2011),pp. 2303-2313
    [58] Mockaitis, K., Estelle, M. Auxin receptors and plant development: a new signaling paradigm Annu. Rev. Cell Dev. Biol., 24 (2008),pp. 55-80
    [59] Nag, A., King, S., Jack, T. Proc. Natl. Acad. Sci. USA, 106 (2009),pp. 22534-22539
    [60] Nagpal, P., Ellis, C.M., Weber, H. et al. Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation Development, 132 (2005),pp. 4107-4118
    [61] Nath, U., Crewford, B.C., Carpenter, R. et al. Genetic control of surface curvature Science, 299 (2003),pp. 1404-1407
    [62] Nodine, M.D., Bartel, D.P. MicroRNAs prevent precocious gene expression and enable pattern formation during plant embryogenesis Genes Dev., 24 (2010),pp. 2678-2692
    [63] Okamuro, J.K., Den Boer, B.G., Jofuku, K.D. Plant Cell, 5 (1993),pp. 1183-1193
    [64] Ori, N., Cohen, A.R., Etzioni, A. et al. Nat. Genet., 39 (2007),pp. 787-791
    [65] Palatnik, J.F., Allen, E., Wu, X. et al. Control of leaf morphogenesis by microRNAs Nature, 425 (2003),pp. 257-263
    [66] Rodriguez, R.E., Mecchia, M.A., Debernardi, J.M. et al. Development, 137 (2010),pp. 103-112
    [67] Schommer, C., Palatnik, J.F., Aggarwal, P. et al. Control of jasmonate biosynthesis and senescence by miR319 targets PLoS Biol., 6 (2008),p. e230
    [68] Schwab, R., Palatnik, J.F., Rieater, M. et al. Specific effects of microRNAs on the plant transcriptome Dev. Cell, 8 (2005),pp. 517-527
    [69] Shleizer-Burko, S., Burko, Y., Ben-Herzel, O. et al. Dynamic growth program regulated by LANCEOLATE enables flexible leaf patterning Development, 138 (2011),pp. 695-704
    [70] Si-Ammour, A., Windels, D., Arn-Bouldoires, E. et al. Plant Physiol., 157 (2011),pp. 683-691
    [71] Singer, S.D., Krogan, N.T., Ashton, N.W. Clues about the ancestral roles of plant MADS-box genes from a functional analysis of moss homologues Plant Cell Rep., 26 (2007),pp. 1155-1169
    [72] Song, J.B., Huang, S.Q., Dalmay, T. et al. Plant Cell Physiol., 53 (2012),pp. 1283-1294
    [73] Song, Q.X., Liu, Y.F., Hu, X.Y. et al. Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing BMC Plant Biol., 11 (2011),p. 5
    [74] Subramanian, S.
    [75] Subramanian, S., Fu, Y., Sunkar, R. et al. Novel and nodulation-regulated microRNAs in soybean roots BMC Genomics, 9 (2008),p. 160
    [76] , Xiao, P., Zhang, B. PLoS ONE, 7 (2012),p. e32017
    [77] Talmor-Neiman, M., Stav, R., Frank, W. et al. Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss Plant J., 47 (2006),pp. 25-37
    [78] Thiebaut, F., Grativol, C., Carnavale-Bottion, M. et al. Computational identification and analysis of novel sugarcane microRNAs BMC Genomics, 13 (2012),p. 290
    [79] Thiebaut, F., Rojas, C.A., Almeida, K.L. et al. Regulation of miR319 during cold stress in sugarcane Plant Cell Environ., 35 (2012),pp. 502-512
    [80] Todesco, M., Rubio-Somoza, I., Paz-Ares, J. et al. PLoS Genet., 6 (2010),p. e1001031
    [81] Uberti-Manassero, N.G., Lucero, L.E., Viola, I.L. et al. The class I protein AtTCP15 modulates plant development through a pathway that overlaps with the one affected by CIN-like TCP proteins J. Exp. Bot., 63 (2012),pp. 809-823
    [82] Vaucheret, H., Vazquez, F., Crete, P. et al. The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development Genes Dev., 18 (2004),pp. 1187-1197
    [83] Wang, J.W., Wang, L.J., Mao, Y.B. et al. Plant Cell, 17 (2005),pp. 2204-2216
    [84] Wang, L., Mai, Y.X., Zhang, Y.C. et al. Mol. Plant, 3 (2010),pp. 794-806
    [85] Williams, L., Grigg, S.P., Xie, M. et al. Development, 132 (2005),pp. 3657-3668
    [86] Wollmann, H., Mica, E., Todesco, M. et al. Development, 137 (2010),pp. 3633-3642
    [87] Wu, M.F., Tian, Q., Reed, J.W. Development, 133 (2006),pp. 4211-4218
    [88] Xia, R., Zhu, H., An, Y.Q. et al. Apple miRNAs and tasiRNAs with novel regulatory networks Genome Biol., 13 (2012),p. R47
    [89] Xie, K., Shen, J., Hou, X. et al. Gradual increase of miR156 regulates temporal expression changes of numerous genes during leaf development in rice Plant Physiol., 158 (2012),pp. 1382-1394
    [90] Xie, Z., Kasschau, K.D., Carrington, J.C. Curr. Biol., 13 (2003),pp. 784-789
    [91] Xue, L.J., Zhang, J.J., Xue, H.W. Characterization and expression profiles of miRNAs in rice seeds Nucleic Acids Res., 37 (2009),pp. 916-930
    [92] Yamaguchi, A., Abe, M. J. Plant Res., 125 (2012),pp. 693-704
    [93] Yang, J.H., Han, S.J., Yoon, E.K. et al. Evidence of an auxin signal pathway, microRNA167-ARF8-GH3, and its response to exogenous auxin in cultured rice cells Nucleic Acids Res., 34 (2006),pp. 1892-1899
    [94] Yoon, E.K., Yang, J.H., Lim, J. et al. Nucleic Acids Res., 38 (2010),pp. 1382-1391
    [95] Zhang, B., Pan, X. Expression of microRNAs in cotton Mol. Biotechnol., 42 (2009),pp. 269-274
    [96] Zhang, J., Zhang, S., Han, S. et al. Genome-wide identification of microRNAs in larch and stage-specific modulation of 11 conserved microRNAs and their targets during somatic embryogenesis Planta, 236 (2012),pp. 647-657
    [97] Zhao, C.Z., Xia, H., Frazier, T.P. et al. BMC Plant Biol., 10 (2010),p. 3
    [98] Zhao, L., Kim, Y., Ding, T.T. et al. Plant J., 51 (2007),pp. 840-849
    [99] Zhou, G.K., Kubo, M., Zhong, R. et al. Plant Cell Physiol., 48 (2007),pp. 391-404
    [100] Zhou, L., Li, X., Liu, Q. et al. Small RNA transcriptome investigation based on next-generation sequencing technology J. Genet. Genomics, 38 (2011),pp. 505-513
    [101] Zhou, L., Liu, Y., Liu, Z. et al. J. Exp. Bot., 61 (2010),pp. 4157-4168
    [102] Zhou, M., Gu, L., Li, P. et al. Front. Biol., 5 (2010),pp. 67-90
  • 加载中
计量
  • 文章访问数:  122
  • HTML全文浏览量:  37
  • PDF下载量:  0
  • 被引次数: 0
出版历程
  • 收稿日期:  2012-10-21
  • 录用日期:  2013-02-22
  • 修回日期:  2013-02-20
  • 网络出版日期:  2013-03-01
  • 刊出日期:  2013-04-20

目录

    /

    返回文章
    返回