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VCSRA: A fast and accurate multiple sequence alignment algorithm with a high degree of parallelism

Dong Dong Wenhe Su Wenqiang Shi Quan Zou Shaoliang Peng

Dong Dong, Wenhe Su, Wenqiang Shi, Quan Zou, Shaoliang Peng. VCSRA: A fast and accurate multiple sequence alignment algorithm with a high degree of parallelism[J]. Journal of Genetics and Genomics, 2018, 45(7): 407-410. doi: 10.1016/j.jgg.2018.07.004
Citation: Dong Dong, Wenhe Su, Wenqiang Shi, Quan Zou, Shaoliang Peng. VCSRA: A fast and accurate multiple sequence alignment algorithm with a high degree of parallelism[J]. Journal of Genetics and Genomics, 2018, 45(7): 407-410. doi: 10.1016/j.jgg.2018.07.004

doi: 10.1016/j.jgg.2018.07.004

VCSRA: A fast and accurate multiple sequence alignment algorithm with a high degree of parallelism

More Information
  • [1] Bahr, A., Thompson, J.D., Thierry, J.C. et al. BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations Nucleic Acids Res., 29 (2001),pp. 323-326
    [2] Chatzou, M., Magis, C., Chang, J.M. et al. Multiple sequence alignment modeling: methods and applications Brief. Bioinf., 17 (2016),pp. 1009-1023
    [3] Katoh, K., Standley, D.M. MAFFT multiple sequence alignment software version 7: improvements in performance and usability Mol. Biol. Evol., 30 (2013),pp. 772-780
    [4] Lassmann, T., Sonnhammer, E.L. Kalign – an accurate and fast multiple sequence alignment algorithm BMC Bioinf., 6 (2005),pp. 1-9
    [5] Needleman, S.B., Wunsch, C.D. A general method applicable to the search for similarities in the amino acid sequence of two proteins J. Mol. Biol., 48 (1970),pp. 443-453
    [6] Smith, T.F., Waterman, M.S. Identification of common molecular subsequences J. Mol. Biol., 147 (1981),pp. 195-197
    [7] Taylor, W.R. Hierarchical method to align large numbers of biological sequences Methods Enzymol., 183 (1990),pp. 456-474
    [8] Ukkonen, E. On-line construction of suffix trees Algorithmica, 14 (1995),pp. 249-260
    [9] Wang, L., Jiang, T. On the complexity of multiple sequence alignment J. Comput. Biol., 1 (1994),pp. 337-348
    [10] Zou, Q., Guo, M.Z., Wang, X.K. et al. An algorithm for DNA multiple sequence alignment based on center star method and keyword tree Acta Electron. Sin., 38 (2009),pp. 1746-1750
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出版历程
  • 收稿日期:  2018-01-09
  • 录用日期:  2018-07-13
  • 修回日期:  2018-07-12
  • 网络出版日期:  2018-07-17
  • 刊出日期:  2018-07-20

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