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Volume 43 Issue 11
Nov.  2016
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Article Contents
Abstract
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Article Navigation >  Journal of Genetics and Genomics  > 2016  >  43(11): 651-661

Identification of microRNAs in rice root in response to nitrate and ammonium

doi: 10.1016/j.jgg.2015.12.002
  • a 

    State Key Laboratory of Plant Genomics, National Center for Plant Gene Research (Beijing), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China

  • b 

    College of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China

  • c 

    School of Agriculture, Henan University of Science and Technology, Luoyang 471023, China

More Information
  • Corresponding author: E-mail address: ccchu@genetics.ac.cn (Chengcai Chu)
  • Received Date: 2015-10-21
  • Accepted Date: 2015-12-18
  • Rev Recd Date: 2015-12-15
    • Available Online: 2016-05-24
  • Publish Date: 2016-11-20
    Abstract
  • Nitrate and ammonium are two major nitrogen (N) sources for higher plants, but they differ in utilization and signaling. MicroRNAs (miRNAs) play an essential role in N signal transduction; however, knowledge remains limited about the regulatory role of miRNAs responsive to different N sources, especially in crop plants. To get global overview on miRNAs involved in N response in rice, we performed high-throughput small RNA-sequencing under different nitrate and ammonium treatments. The results demonstrated that only 16 and 11 miRNAs were significantly induced by nitrate and ammonium under short-term treatment, respectively. However, 60 differentially expressed miRNAs were found between nitrate and ammonium under long-term cultivation. These results suggested that miRNA response greatly differentiates between nitrate and ammonium treatments. Furthermore, 44 miRNAs were found to be differentially expressed between high- and low-N conditions. Our study reveals comprehensive expression profiling of miRNAs responsive to different N sources and different N treatments, which advances our understanding on the regulation of different N signaling and homeostasis mediated by miRNAs.
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