|
Abramson, J., Adler, J., Dunger, J., Evans, R., Green, T., Pritzel, A., Ronneberger, O., Willmore, L., Ballard, A.J., Bambrick, J., et al., 2024. Accurate structure prediction of biomolecular interactions with AlphaFold 3. Nature 630, 493-500.
|
|
Abreu, M.E., Munne-Bosch, S., 2009. Salicylic acid deficiency in NahG transgenic lines and sid2 mutants increases seed yield in the annual plant Arabidopsis thaliana. J. Exp. Bot. 60, 1261-1271.
|
|
Adamski, N.M., Anastasiou, E., Eriksson, S., O'Neill, C.M., Lenhard, M., 2009. Local maternal control of seed size by KLUH/CYP78A5-dependent growth signaling. Proc. Natl. Acad. Sci. U. S. A. 106, 20115-20120.
|
|
Alder, A., Jamil, M., Marzorati, M., Bruno, M., Vermathen, M., Bigler, P., Ghisla, S., Bouwmeester, H., Beyer, P., Al-Babili, S., 2012. The path from β-carotene to carlactone, a strigolactone-like plant hormone. Science 335, 1348-1351.
|
|
Anastasiou, E., Kenz, S., Gerstung, M., MacLean, D., Timmer, J., Fleck, C., Lenhard, M., 2007. Control of plant organ size by KLUH/CYP78A5-dependent intercellular signaling. Dev. Cell 13, 843-856.
|
|
Ando, A., Kirkbride, R.C., Qiao, H., Chen, Z.J., 2023. Endosperm and maternal-specific expression of EIN2 in the endosperm affects endosperm cellularization and seed size in Arabidopsis. Genetics 223, iyac161.
|
|
Ashikari, M., Sakakibara, H., Lin, S., Yamamoto, T., Takashi, T., Nishimura, A., Angeles, E.R., Qian, Q., Kitano, H., et al., 2005. Cytokinin oxidase regulates rice grain production. Science 309, 741-745.
|
|
Azizi, P., Rafii, M.Y., Maziah, M., Abdullah, S.N.A., Hanafi, M.M., Latif, M.A., Rashid, A.A., Sahebi, M., 2015. Understanding the shoot apical meristem regulation: a study of the phytohormones, auxin and cytokinin, in rice. Mech. Dev. 135, 1-15.
|
|
Ban, X., Qin, L., Yan, J., Wu, J., Li, Q., Su, X., Hao, Y., Hu, Q., Kou, L., Yan, Z., et al., 2025. Manipulation of a strigolactone transporter in tomato confers resistance to the parasitic weed broomrape. Innovation (Camb) 6, 100815.
|
|
Bartrina, I., Otto, E., Strnad, M., Werner, T., Schmulling, T., 2011. Cytokinin regulates the activity of reproductive meristems, flower organ size, ovule formation, and thus seed yield in Arabidopsis thaliana. Plant Cell 23, 69-80.
|
|
Binder, B.M., 2020. Ethylene signaling in plants. J. Biol. Chem. 295, 7710-7725.
|
|
Brian, P.W., 1966. The gibberellins as hormones. Int. Rev. Cytol. 19, 229-266.
|
|
Burgess, A.J., Masclaux-Daubresse, C., Strittmatter, G., Weber, A.P.M., Taylor, S.H., Harbinson, J., Yin, X.Y., Long, S., Paul, M.J., Westhoff, P., et al., 2023. Improving crop yield potential: underlying biological processes and future prospects. Food Energy Secur. 12, e435.
|
|
Cai, Q., Yuan, Z., Chen, M., Yin, C., Luo, Z., Zhao, X., Liang, W., Hu, J., Zhang, D., 2014. Jasmonic acid regulates spikelet development in rice. Nat. Commun. 5, 3476.
|
|
Cao, J., Qin, Z., Cui, G., Chen, Z., Cheng, X., Peng, H., Yao, Y., Hu, Z., Guo, W., Ni, Z., et al., 2024. Natural variation of STKc_GSK3 kinase TaSG-D1 contributes to heat stress tolerance in Indian dwarf wheat. Nat. Commun. 15, 2097.
|
|
Carlos O. Miller, F.S., F. S. Okumura, M. H. Von Saltza and F. M. Strong, 1955. Isolation, structure and synthesis of kinetin, a substance promoting cell division. J. Am. Chem. Soc. 78, 1375.
|
|
Chakrabarti, M., Zhang, N., Sauvage, C., Munos, S., Blanca, J., Canizares, J., Diez, M.J., Schneider, R., Mazourek, M., McClead, J., et al., 2013. A cytochrome P450 regulates a domestication trait in cultivated tomato. Proc. Natl. Acad. Sci. U. S. A. 110, 17125-17130.
|
|
Che, R., Tong, H., Shi, B., Liu, Y., Fang, S., Liu, D., Xiao, Y., Hu, B., Liu, L., Wang, H.,et al., 2015. Control of grain size and rice yield by GL2-mediated brassinosteroid responses. Nat. Plants 2, 15195.
|
|
Chen, H.Y., Yu, H., Jiang, W.Z., Li, H.Y., Wu, T., Chu, J.F., Xin, P.Y., Li, Z., Wang, R., Zhou, T., et al., 2021. Overexpression of ovate family protein 22 confers multiple morphological changes and represses gibberellin and brassinosteroid signalings in transgenic rice. Plant Science 304, 110734.
|
|
Chen, J., Zhang, L., Zhu, M., Han, L., Lv, Y., Liu, Y., Li, P., Jing, H., Cai, H., 2018. Non-dormant Axillary Bud 1 regulates axillary bud outgrowth in sorghum. J. Integr. Plant Biol. 60, 938-955.
|
|
Chen, K., Wang, Y., Zhang, R., Zhang, H., Gao, C., 2019a. CRISPR/Cas genome editing and precision plant breeding in agriculture. Annu. Rev. Plant Biol. 70, 667-697.
|
|
Chen, W.W., Cheng, Z.J., Liu, L.L., Wang, M., You, X.M., Wang, J., Zhang, F., Zhou, C.L., Zhang, Z., Zhang, H., et al., 2019b. Small Grain and Dwarf 2, encoding an HD-Zip II family transcription factor, regulates plant development by modulating gibberellin biosynthesis in rice. Plant Science 288, 110208.
|
|
Chen, X., Jiang, L., Zheng, J., Chen, F., Wang, T., Wang, M., Tao, Y., Wang, H., Hong, Z., Huang, Y., et al., 2019c. A missense mutation in Large Grain Size 1 increases grain size and enhances cold tolerance in rice. J. Exp. Bot. 70, 3851-3866.
|
|
Chen, Y., Xiang, Z., Liu, M., Wang, S., Zhang, L., Cai, D., Huang, Y., Mao, D., Fu, J., Chen, L., 2023a. ABA biosynthesis gene OsNCED3 contributes to preharvest sprouting resistance and grain development in rice. Plant Cell Environ. 46, 1384-1401.
|
|
Chen, Y., Xu, Y., Luo, W., Li, W., Chen, N., Zhang, D., Chong, K., 2013. The F-box protein OsFBK12 targets OsSAMS1 for degradation and affects pleiotropic phenotypes, including leaf senescence, in rice. Plant Physiol. 163, 1673-1685.
|
|
Chen, Y., Yan, Y., Wu, T.T., Zhang, G.L., Yin, H., Chen, W., Wang, S., Chang, F., Gou, J.Y., 2020. Cloning of wheat keto-acyl thiolase 2B reveals a role of jasmonic acid in grain weight determination. Nat. Commun. 11, 6266.
|
|
Chen, Z., Zheng, Z., Huang, J., Lai, Z., Fan, B., 2009. Biosynthesis of salicylic acid in plants. Plant Signal. Behav. 4, 493-496.
|
|
Cheng, X., Xin, M., Xu, R., Chen, Z., Cai, W., Chai, L., Xu, H., Jia, L., Feng, Z., Wang, Z., et al., 2020. A single amino acid substitution in STKc_GSK3 kinase conferring semispherical grains and its implications for the origin of Triticum sphaerococcum. Plant Cell 32, 923-934.
|
|
Cheng, Z., Zhao, X., Shao, X., Wang, F., Zhou, C., Liu, Y., Zhang, Y., Zhang, X., 2014. Abscisic acid regulates early seed development in Arabidopsis by ABI5-mediated transcription of SHORT HYPOCOTYL UNDER BLUE1. Plant Cell 26, 1053-1068.
|
|
Choe, S., Dilkes, B.P., Fujioka, S., Takatsuto, S., Sakurai, A., Feldmann, K.A., 1998. The DWF4 gene of Arabidopsis encodes a cytochrome P450 that mediates multiple 22alpha-hydroxylation steps in brassinosteroid biosynthesis. Plant Cell 10, 231-243.
|
|
Choe, S., Fujioka, S., Noguchi, T., Takatsuto, S., Yoshida, S., Feldmann, K.A., 2001. Overexpression of DWARF4 in the brassinosteroid biosynthetic pathway results in increased vegetative growth and seed yield in Arabidopsis. Plant J. 26, 573-582.
|
|
Cook, C.E., Whichard, L.P., Turner, B., Wall, M.E., Egley, G.H., 1966. Germination of witchweed (Striga lutea Lour.): isolation and properties of a potent stimulant. Science 154, 1189-1190.
|
|
Dong, G., Xiong, H., Zeng, W., Li, J., Du, D., 2022. Ectopic expression of the rice grain-size-affecting gene GS5 in maize affects kernel size by regulating endosperm starch synthesis. Genes 13, 1542.
|
|
Duan, P., Ni, S., Wang, J., Zhang, B., Xu, R., Wang, Y., Chen, H., Zhu, X., Li, Y., 2015. Regulation of OsGRF4 by OsmiR396 controls grain size and yield in rice. Nat. Plants 2, 15203.
|
|
Duan, P., Xu, J., Zeng, D., Zhang, B., Geng, M., Zhang, G., Huang, K., Huang, L., Xu, R., Ge, S.,et al., 2017. Natural variation in the promoter of GSE5 contributes to grain size diversity in rice. Mol. Plant. 10, 685-694.
|
|
Eagles, C., Wareing, P., 1963. Dormancy regulators in woody plants: experimental induction of dormancy in Betula pubescens. Nature 199, 874-875.
|
|
Fang, N., Xu, R., Huang, L., Zhang, B., Duan, P., Li, N., Luo, Y., Li, Y., 2016. SMALL GRAIN 11 controls grain size, grain number and grain yield in rice. Rice 9, 64.
|
|
Fang, W., Wang, Z., Cui, R., Li, J., Li, Y., 2012. Maternal control of seed size by EOD3/CYP78A6 in Arabidopsis thaliana. Plant J. 70, 929-939.
|
|
Finkelstein, R., 2013. Abscisic Acid synthesis and response. Arabidopsis Book 11, e0166.
|
|
Fujioka, S., Sakurai, A., 1997. Brassinosteroids. Nat. Prod. Rep. 14, 1-10.
|
|
Gampala, S., Kim, T., He, J., Tang, W., Deng, Z., Bai, M., Guan, S., Lalonde, S., Sun, Y., Gendron, J., et al., 2007. An essential role for 14-3-3 proteins in brassinosteroid signal transduction in Arabidopsis. Dev. Cell 13, 177-189.
|
|
Gao, X., Zhang, J., Cai, G., Du, H., Li, J., Wang, R., Wang, Y., Yin, J., Zhang, W., Zhang, H., et al., 2022. qGL3/OsPPKL1 induces phosphorylation of 14-3-3 protein OsGF14b to inhibit OsBZR1 function in brassinosteroid signaling. Plant Physiol. 188, 624-636.
|
|
Gao, X., Zhang, J., Zhang, X., Zhou, J., Jiang, Z., Huang, P., Tang, Z., Bao, Y., Cheng, J., Tang, H., et al., 2019. Rice qGL3/OsPPKL1 functions with the GSK3/SHAGGY-Like kinase OsGSK3 to modulate brassinosteroid signaling. Plant Cell 31, 1077-1093.
|
|
Gasparis, S., Miloszewski, M., 2023. Genetic basis of grain size and weight in rice, wheat, and barley. Int. J. Mol. Sci. 24, 16921.
|
|
Gomez, M.D., Cored, I., Barro-Trastoy, D., Sanchez-Matilla, J., Tornero, P., Perez-Amador, M.A., 2023. DELLA proteins positively regulate seed size in Arabidopsis. Development 150, dev201853.
|
|
Griffiths, J., Murase, K., Rieu, I., Zentella, R., Zhang, Z., Powers, S., Gong, F., Phillips, A., Hedden, P., Sun, T., et al., 2006. Genetic characterization and functional analysis of the GID1 gibberellin receptors in Arabidopsis. Plant Cell 18, 3399-3414.
|
|
Gu, B., Zhou, T., Luo, J., Liu, H., Wang, Y., Shangguan, Y., Zhu, J., Li, Y., Sang, T., Wang, Z., et al., 2015. An-2 encodes a cytokinin synthesis enzyme that regulates awn length and grain production in rice. Mol. Plant. 8, 1635-1650.
|
|
Guo, F., Huang, Y.Z., Qi, P.P., Lian, G.W., Hu, X.M., Han, N., Wang, J.H., Zhu, M.Y., Qian, Q., Bian, H.W., 2021. Functional analysis of auxin receptor OsTIR1/OsAFB family members in rice grain yield, tillering, plant height, root system, germination, and auxinic herbicide resistance. New Phytol. 229, 2676-2692.
|
|
Guo, Q., Yoshida, Y., Major, I.T., Wang, K., Sugimoto, K., Kapali, G., Havko, N.E., Benning, C., Howe, G.A., 2018. JAZ repressors of metabolic defense promote growth and reproductive fitness in Arabidopsis. Proc. Natl. Acad. Sci. U. S. A. 115, e10768-e10777.
|
|
Guo, T., Chen, K., Dong, N., Ye, W., Shan, J., Lin, H., 2020. Tillering and small grain 1 dominates the tryptophan aminotransferase family required for local auxin biosynthesis in rice. J. Integr. Plant Biol. 62, 581-600.
|
|
Hirano, K., Yoshida, H., Aya, K., Kawamura, M., Hayashi, M., Hobo, T., Sato-Izawa, K., Kitano, H., Ueguchi-Tanaka, M., Matsuoka, M., 2017. SMALL ORGAN SIZE 1 and SMALL ORGAN SIZE 2/DWARF AND LOW-TILLERING form a complex to integrate auxin and brassinosteroid signaling in rice. Mol. Plant. 10, 590-604.
|
|
Hong, Z., Ueguchi-Tanaka, M., Shimizu-Sato, S., Inukai, Y., Fujioka, S., Shimada, Y., Takatsuto, S., Agetsuma, M., Yoshida, S., Watanabe, Y., et al., 2002. Loss-of-function of a rice brassinosteroid biosynthetic enzyme, C-6 oxidase, prevents the organized arrangement and polar elongation of cells in the leaves and stem. Plant J. 32, 495-508.
|
|
Howe, G., Major, I., Koo, A., 2018. Modularity in jasmonate signaling for multistress resilience. Annu. Rev. Plant Biol. 69, 387-415.
|
|
Hu, J., Wang, Y., Fang, Y., Zeng, L., Xu, J., Yu, H., Shi, Z., Pan, J., Zhang, D., Kang, S., et al., 2015. A rare allele of GS2 enhances grain size and grain yield in rice. Mol. Plant. 8, 1455-1465.
|
|
Hu, M., Zhang, H., Cao, J., Zhu, X., Wang, S., Jiang, H., Wu, Z., Lu, J., Chang, C., Sun, G., et al., 2016. Characterization of an IAA-glucose hydrolase gene TaTGW6 associated with grain weight in common wheat (Triticum aestivum L.). Mol. Breed. 36, 25.
|
|
Hu, S., Yang, H., Gao, H., Yan, J., Xie, D., 2021. Control of seed size by jasmonate. Sci. China-Life Sci. 64, 1215-1226.
|
|
Hu, S., Yu, K., Yan, J., Shan, X., Xie, D., 2023. Jasmonate perception: ligand-receptor interaction, regulation, and evolution. Mol. Plant. 16, 23-42.
|
|
Hu, W., Wang, R., Hao, X., Li, S., Zhao, X., Xie, Z., Wu, S., Huang, L., Tan, Y., Tian, L., et al., 2024b. OsLCD3 interacts with OsSAMS1 to regulate grain size via ethylene/polyamine homeostasis control. Plant J. 119, 705-719.
|
|
Hu, Z., Lu, S., Wang, M., He, H., Sun, L., Wang, H., Liu, X., Jiang, L., Sun, J., Xin, X., Kong, W., Chu, C., Xue, H., Yang, J., Luo, X., Liu, J., 2018. A novel QTL qTGW3 encodes the GSK3/SHAGGY-Like kinase OsGSK5/OsSK41 that interacts with OsARF4 to negatively regulate grain size and weight in rice. Mol. Plant. 11, 736-749.
|
|
Huang, Y., Dong, H., Mou, C., Wang, P., Hao, Q., Zhang, M., Wu, H., Zhang, F., Ma, T., Miao, R., et al., 2022. Ribonuclease H-like gene SMALL GRAIN2 regulates grain size in rice through brassinosteroid signaling pathway. J. Integr. Plant Biol. 64, 1883-1900.
|
|
Hubbard, K., Nishimura, N., Hitomi, K., Getzoff, E., Schroeder, J., 2010. Early abscisic acid signal transduction mechanisms: newly discovered components and newly emerging questions. Genes Dev. 24, 1695-1708.
|
|
Hussain, S., Nanda, S., Zhang, J., Rehmani, M.I.A., Suleman, M., Li, G., Hou, H., 2021. Auxin and cytokinin interplay during leaf morphogenesis and phyllotaxy. Plants 10, 1732.
|
|
Ishimaru, K., Hirotsu, N., Madoka, Y., Murakami, N., Hara, N., Onodera, H., Kashiwagi, T., Ujiie, K., Shimizu, B., Onishi, A., et al., 2013. Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield. Nat. Genet. 45, 707-711.
|
|
Jia, M., Li, Y., Wang, Z., Tao, S., Sun, G., Kong, X., Wang, K., Ye, X., Liu, S., Geng, S., et al., 2021. TaIAA21 represses TaARF25-mediated expression of TaERFs required for grain size and weight development in wheat. Plant J. 108, 1754-1767.
|
|
Jiang, K., Yan, Z., Di Bernardo, M., Sgrizzi, S., Villiger, L., Kayabolen, A., Kim, B., Carscadden, J., Hiraizumi, M., et al., 2025. Rapid in silico directed evolution by a protein language model with EVOLVEpro. Science 387, eadr6006.
|
|
Jin, S., Zhang, M., Leng, Y., Xu, L., Jia, S., Wang, S., Song, T., Wang, R., Yang, Q., Tao, T., et al., 2022. OsNAC129 regulates seed development and plant growth and participates in the brassinosteroid signaling pathway. Front. Plant Sci. 13, 905148.
|
|
Kang, I., Steffen, J., Portereiko, M., Lloyd, A., Drews, G., 2008. The AGL62 MADS domain protein regulates cellularization during endosperm development in Arabidopsis. Plant Cell 20, 635-647.
|
|
Kieber, J., Schaller, G., 2018. Cytokinin signaling in plant development. Development 145, dev149344.
|
|
Kim, E., Lee, S., Park, C., Kim, S., Hsu, C., Xu, S., Wang, Z., Kim, S., Kim, T., 2019. Plant U-Box40 mediates degradation of the Brassinosteroid-responsive transcription factor BZR1 in Arabidopsis roots. Plant Cell 31, 791-808.
|
|
Kim, T., Guan, S., Sun, Y., Deng, Z., Tang, W., Shang, J., Sun, Y., Burlingame, A., Wang, Z., 2009. Brassinosteroid signal transduction from cell-surface receptor kinases to nuclear transcription factors. Nat. Cell Biol. 11, 1254-1260.
|
|
Kohlen, W., Charnikhova, T., Lammers, M., Pollina, T., Toth, P., Haider, I., Pozo, M.J., de Maagd, R.A., Ruyter-Spira, C., et al., 2012. The tomato CAROTENOID CLEAVAGE DIOXYGENASE8 (SlCCD8) regulates rhizosphere signaling, plant architecture and affects reproductive development through strigolactone biosynthesis. New Phytol. 196, 535-547.
|
|
Kretzschmar, T., Kohlen, W., Sasse, J., Borghi, L., Schlegel, M., Bachelier, J.B., Reinhardt, D., Bours, R., Bouwmeester, H.J., Martinoia, E., 2012. A petunia ABC protein controls strigolactone-dependent symbiotic signalling and branching. Nature 483, 341-344.
|
|
Kudoyarova, G., 2024. Special issue "phytohormones: important participators in plant growth and development". Int. J. Mol. Sci. 25, 1380.
|
|
Lan, D., Cao, L., Liu, M., Ma, F., Yan, P., Zhang, X., Hu, J., Niu, F., He, S., Cui, J., et al., 2023. The identification and characterization of a plant height and grain length related gene hfr131 in rice. Front. Plant Sci. 14, 1152196.
|
|
Lan, J., Lin, Q., Zhou, C., Ren, Y., Liu, X., Miao, R., Jing, R., Mou, C., Nguyen, T., Zhu, X., et al., 2020. Small grain and semi-dwarf 3, a WRKY transcription factor, negatively regulates plant height and grain size by stabilizing SLR1 expression in rice. Plant Mol. Biol. 104, 429-450.
|
|
Lee, S., Kim, S., Han, S., An, G., Kim, S., 2017. A gibberellin-stimulated transcript, OsGASR1, controls seedling growth and α-amylase expression in rice. J. Plant Physiol. 214, 116-122.
|
|
Li, A., Sun, X., Liu, L., 2022a. Action of salicylic acid on plant growth. Front. Plant Sci. 13, 878076.
|
|
Li, F., Wu, L., Li, X., Chai, Y., Ruan, N., Wang, Y., Xu, N., Yu, Z., Wang, X., Chen, H., et al., 2024. Dissecting the molecular basis of the ultra-large grain formation in rice. New Phytol. 243, 2251-2264.
|
|
Li, G., An, L., Yang, W., Yang, L., Wei, T., Shi, J., Wang, J., Doonan, J.H., Xie, K., Fernie, A.R., et al., 2025a. Integrated biotechnological and AI innovations for crop improvement. Nature 643, 925-937.
|
|
Li, J., Jiang, J., Qian, Q., Xu, Y., Zhang, C., Xiao, J., Du, C., Luo, W., Zou, G., Chen, M., et al., 2011a. Mutation of rice BC12/GDD1, which encodes a Kinesin-Like protein that binds to a GA biosynthesis gene promoter, leads to dwarfism with impaired cell elongation. Plant Cell 23, 628-640.
|
|
Li, J., Wen, J., Lease, K., Doke, J., Tax, F., Walker, J., 2002. BAK1, an Arabidopsis LRR receptor-like protein kinase, interacts with BRI1 and modulates brassinosteroid signaling. Cell 110, 213-222.
|
|
Li, J., Zhang, B., Duan, P., Yan, L., Yu, H., Zhang, L., Li, N., Zheng, L., Chai, T., Xu, R., et al., 2022b. An ERAD-related E2-E3 enzyme pair controls grain size and weight through the brassinosteroid signaling pathway in rice. Plant Cell 35, 1076-1091.
|
|
Li, M., Yu, G., Cao, C., Liu, P., 2021. Metabolism, signaling, and transport of jasmonates. Plant Commun. 2, 100231.
|
|
Li, N., Xu, R., Duan, P., Li, Y., 2018a. Control of grain size in rice. Plant Reprod. 31, 237-251.
|
|
Li, N., Xu, R., Li, Y., 2019a. Molecular Networks of Seed Size Control in Plants. Annu. Rev. Plant Biol. 70, 435-463.
|
|
Li, Q., Yu, J., Lu, J., Fei, H., Luo, M., Cao, B., Huang, L., Zhang, C., Liu, Q., 2018b. Seed-specific expression of OsDWF4, a rate-limiting gene involved in brassinosteroids biosynthesis, improves both grain yield and quality in rice. J. Agric. Food Chem. 66, 3759-3772.
|
|
Li, S., Tian, Y., Wu, K., Ye, Y., Yu, J., Zhang, J., Liu, Q., Hu, M., Li, H., Tong, Y., et al., 2018c. Modulating plant growth-metabolism coordination for sustainable agriculture. Nature 560, 595-600.
|
|
Li, S., Zhao, Z., Liu, T., Zhang, J., Xing, X., Feng, M., Liu, X., Luo, S., Dong, K., Wang, J., et al., 2025b. The G-protein γ subunit DEP1 facilitates brassinosteroid signaling in rice via a MYB-bHLH-ARF module. Plant Cell 37, koaf122.
|
|
Li, S., Zhao, B., Yuan, D., Duan, M., Qian, Q., Tang, L., Wang, B., Liu, X., Zhang, J., Wang, J., et al., 2013. Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression. Proc. Natl. Acad. Sci. U. S. A. 110, 3167-3172.
|
|
Li, X., Shi, S., Tao, Q., Tao, Y., Miao, J., Peng, X., Li, C., Yang, Z., Zhou, Y., Liang, G., 2019b. OsGASR9 positively regulates grain size and yield in rice (Oryza sativa). Plant Sci. 286, 17-27.
|
|
Li, Y., Fan, C., Xing, Y., Jiang, Y., Luo, L., Sun, L., Shao, D., Xu, C., Li, X., Xiao, J., et al., 2011b. Natural variation in GS5 plays an important role in regulating grain size and yield in rice. Nat. Genet. 43, 1266-1269.
|
|
Li, Y., Huang, K., Zhang, L., Zhang, B., Duan, P., Zhang, G., Huang, X., Zhou, C., Han, N., Zheng, L., et al., 2025. A molecular framework for the GS2-SUG1 module-mediated control of grain size and weight in rice. Nat. Commun. 16, 3944.
|
|
Ling, H., Zhao, S., Liu, D., Wang, J., Sun, H., Zhang, C., Fan, H., Li, D., Dong, L., Tao, Y., et al., 2013. Draft genome of the wheat A-genome progenitor Triticum urartu. Nature 496, 87-90.
|
|
Liu, C., Ma, T., Yuan, D., Zhou, Y., Long, Y., Li, Z., Dong, Z., Duan, M., Yu, D., Jing, Y., et al., 2022a. The OsEIL1-OsERF115-target gene regulatory module controls grain size and weight in rice. Plant Biotechnol. J. 20, 1470-1486.
|
|
Liu, D., Zhao, H., Xiao, Y., Zhang, G., Cao, S., Yin, W., Qian, Y., Yin, Y., Zhang, J., Chen, S., et al., 2022b. A cryptic inhibitor of cytokinin phosphorelay controls rice grain size. Mol. Plant. 15, 293-307.
|
|
Liu, H., Luo, Q., Tan, C., Song, J., Zhang, T., Men, S., 2023. Biosynthesis- and transport-mediated dynamic auxin distribution during seed development controls seed size in Arabidopsis. Plant J. 113, 1259-1277.
|
|
Liu, J., Chen, J., Zheng, X., Wu, F., Lin, Q., Heng, Y., Tian, P., Cheng, Z., Yu, X., Zhou, K., et al., 2017. GW5 acts in the brassinosteroid signalling pathway to regulate grain width and weight in rice. Nat. Plants 3, 17043.
|
|
Liu, K., Li, M., Zhang, B., Yin, X., Xia, X., Wang, M., Cui, Y., 2022c. Poaceae orthologs of rice OsSGL, DUF1645 domain-containing genes, positively regulate drought tolerance, grain length and weight in rice. Rice Sci. 29, 257-267.
|
|
Liu, L., Tong, H., Xiao, Y., Che, R., Xu, F., Hu, B., Liang, C., Chu, J., Li, J., Chu, C., 2015. Activation of Big Grain1 significantly improves grain size by regulating auxin transport in rice. Proc. Natl. Acad. Sci. U. S. A. 112, 11102-11107.
|
|
Liu, T., Zhang, J., Wang, M., Wang, Z., Li, G., Qu, L., Wang, G., 2007. Expression and functional analysis of ZmDWF4, an ortholog of Arabidopsis DWF4 from maize (Zea mays L.). Plant Cell Rep. 26, 2091-2099.
|
|
Liu, Y., Li, H., Liu, J., Wang, Y., Jiang, C., Zhou, Z., Zhuo, L., Li, W., Fernie, A.R., Jackson, D., et al., 2024. The additive function of YIGE2 and YIGE1 in regulating maize ear length. Plant J. 119, 1327-1335.
|
|
Liu, Z., Li, N., Zhang, Y., Li, Y., 2020. Transcriptional repression of GIF1 by the KIX-PPD-MYC repressor complex controls seed size in Arabidopsis. Nat. Commun. 11, 1846.
|
|
Locascio, A., Roig-Villanova, I., Bernardi, J., Varotto, S., 2014. Current perspectives on the hormonal control of seed development in Arabidopsis and maize: a focus on auxin. Front. Plant Sci. 5, 412.
|
|
Lu, X., Xiong, Q., Cheng, T., Li, Q., Liu, X., Bi, Y., Li, W., Zhang, W., Ma, B., Lai, Y., et al., 2017. A PP2C-1 allele underlying a Quantitative Trait Locus enhances soybean 100-seed weight. Mol. Plant. 10, 670-684.
|
|
Luo, Y., Zhang, M., Liu, Y., Liu, J., Li, W., Chen, G., Peng, Y., Jin, M., Wei, W., Jian, L., et al., 2022. Genetic variation in YIGE1 contributes to ear length and grain yield in maize. New Phytol. 234, 513-526.
|
|
Lyu, J., Wang, D., Duan, P., Liu, Y., Huang, K., Zeng, D., Zhang, L., Dong, G., Li, Y., Xu, R., et al., 2020. Control of grain size and weight by the GSK2-LARGE1/OML4 pathway in rice. Plant Cell 32, 1905-1918.
|
|
Lyu, J., Wang, D., Sun, N., Yang, F., Li, X., Mu, J., Zhou, R., Zheng, G., Yang, X., Zhang, C., et al., 2024. The TaSnRK1-TabHLH489 module integrates brassinosteroid and sugar signalling to regulate the grain length in bread wheat. Plant Biotechnol. J. 22, 1989-2006.
|
|
Ma, B., He, S., Duan, K., Yin, C., Chen, H., Yang, C., Xiong, Q., Song, Q., Lu, X., Chen, H., et al., 2013. Identification of rice ethylene-response mutants and characterization of MHZ7/OsEIN2 in distinct ethylene response and yield trait regulation. Mol. Plant. 6, 1830-1848.
|
|
Ma, B., Zhou, Y., Chen, H., He, S., Huang, Y., Zhao, H., Lu, X., Zhang, W., Pang, J., Chen, S., et al., 2018. Membrane protein MHZ3 stabilizes OsEIN2 in rice by interacting with its Nramp-like domain. Proc. Natl. Acad. Sci. U. S. A. 115, 2520-2525.
|
|
Ma, L., Li, T., Hao, C., Wang, Y., Chen, X., Zhang, X., 2016. TaGS5-3A, a grain size gene selected during wheat improvement for larger kernel and yield. Plant Biotechnol. J. 14, 1269-1280.
|
|
Ma, M., Shen, S., Bai, C., Wang, W., Feng, X., Ying, J., Song, X., 2023. Control of grain size in rice by TGW3 phosphorylation of OsIAA10 through potentiation of OsIAA10-OsARF4-mediated auxin signaling. Cell Reports 42, 112187.
|
|
Ma, M., Wang, Q., Li, Z., Cheng, H., Li, Z., Liu, X., Song, W., Appels, R., Zhao, H., 2015. Expression of TaCYP78A3, a gene encoding cytochrome P450 CYP78A3 protein in wheat (Triticum aestivum L.), affects seed size. Plant J. 83, 312-325.
|
|
Mai, H., Qin, T., Wei, H., Yu, Z., Pang, G., Liang, Z., Ni, J., Yang, H., Tang, H., Xiao, L., et al., 2024. Overexpression of OsACL5 triggers environmentally-dependent leaf rolling and reduces grain size in rice. Plant Biotechnol. J. 22, 833-847.
|
|
Mehra, P., Pandey, B., Verma, L., Prusty, A., Singh, A., Sharma, S., Malik, N., Bennett, M., Parida, S., Giri, J., et al., 2022. OsJAZ11 regulates spikelet and seed development in rice. Plant Direct 6, e401.
|
|
Meng, L., Xu, M., Wan, W., Wang, J., 2018. Integration of environmental and developmental (or metabolic) control of seed mass by sugar and ethylene metabolisms in Arabidopsis. J. Agric. Food Chem. 66, 3477-3488.
|
|
Morinaka, Y., Sakamoto, T., Inukai, Y., Agetsuma, M., Kitano, H., Ashikari, M., Matsuoka, M., 2006. Morphological alteration caused by brassinosteroid insensitivity increases the biomass and grain production of rice. Plant physiol. 141, 924-931.
|
|
Moubayidin, L., Di Mambro, R., Sabatini, S., 2009. Cytokinin-auxin crosstalk. Trends Plant Sci. 14, 557-562.
|
|
Nagasawa, N., Hibara, K., Heppard, E.P., Vander Velden, K., Luck, S., Beatty, M., Nagato, Y., Sakai, H., 2013. GIANT EMBRYO encodes CYP78A13, required for proper size balance between embryo and endosperm in rice. Plant J. 75, 592-605.
|
|
Nakamura, A., Fujioka, S., Sunohara, H., Kamiya, N., Hong, Z., Inukai, Y., Miura, K., Takatsuto, S., Yoshida, S., Ueguchi-Tanaka, M., et al., 2006. The role of OsBRI1 and its homologous genes, OsBRL1 and OsBRL3, in Rice. Plant Physiol. 140, 580-590.
|
|
Nam, K.H., Li, J., 2002. BRI1/BAK1, a receptor kinase pair mediating brassinosteroid signaling. Cell 110, 203-212.
|
|
Nambara, E., Marion-Poll, A., 2005. Abscisic acid biosynthesis and catabolism. Annu. Rev. Plant Biol. 56, 165-185.
|
|
Niaz, M., Zhang, L., Lv, G., Hu, H., Yang, X., Cheng, Y., Zheng, Y., Zhang, B., Yan, X., Htun, A., et al., 2023. Identification of TaGL1-B1 gene controlling grain length through regulation of jasmonic acid in common wheat. Plant Biotechnol. J. 21, 979-989.
|
|
Ning, Q., Jian, Y., Du, Y., Li, Y., Shen, X., Jia, H., Zhao, R., Zhan, J., Yang, F., Jackson, D., et al., 2021. An ethylene biosynthesis enzyme controls quantitative variation in maize ear length and kernel yield. Nat. Commun. 12, 5832.
|
|
Nolan, T., Vukasinovic, N., Liu, D., Russinova, E., Yin, Y., 2020. Brassinosteroids: multidimensional regulators of plant growth, development, and stress responses. Plant Cell 32, 295-318.
|
|
Ohkuma, K., Lyon, J., Addicott, F., Smith, O., 1963. Abscisin II, an abscission-accelerating substance from young cotton fruit. Science 142, 1592-1593.
|
|
Okushima, Y., Mitina, I., Quach, H., Theologis, A., 2005. AUXIN RESPONSE FACTOR 2 (ARF2): a pleiotropic developmental regulator. Plant J. 43, 29-46.
|
|
Peng, J., Richards, D., Hartley, N., Murphy, G., Devos, K., Flintham, J., Beales, J., Fish, L., Worland, A., Pelica, F., et al., 1999. ‘Green revolution’ genes encode mutant gibberellin response modulators. Nature 400, 256-261.
|
|
Prigge, M., Platre, M., Kadakia, N., Zhang, Y., Greenham, K., Szutu, W., Pandey, B., Bhosale, R., Bennett, M., Busch, W., et al., 2020. Genetic analysis of the Arabidopsis TIR1/AFB auxin receptors reveals both overlapping and specialized functions. Elife 9, 54740.
|
|
Qi, X., Liu, C., Song, L., Li, Y., Li, M., 2017. PaCYP78A9, a cytochrome P450, regulates fruit size in sweet cherry (Prunus avium L.). Front. Plant Sci. 8, 2076.
|
|
Qi, Z., Xiong, L., 2013. Characterization of a purine permease family gene OsPUP7 involved in growth and development control in rice. J. Integr. Plant Biol. 55, 1119-1135.
|
|
Qiao, J., Jiang, H., Lin, Y., Shang, L., Wang, M., Li, D., Fu, X., Geisler, M., Qi, Y., Gao, Z., et al., 2021. A novel miR167a-OsARF6-OsAUX3 module regulates grain length and weight in rice. Mol. Plant. 14, 1683-1698.
|
|
Rekhter, D., Ludke, D., Ding, Y., Feussner, K., Zienkiewicz, K., Lipka, V., Wiermer, M., Zhang, Y., Feussner, I., 2019. Isochorismate-derived biosynthesis of the plant stress hormone salicylic acid. Science 365, 498-502.
|
|
Ren, D., Yu, H., Rao, Y., Xu, Q., Zhou, T., Hu, J., Zhang, Y., Zhang, G., Zhu, L., Gao, Z., et al., 2018. 'Two-floret spikelet' as a novel resource has the potential to increase rice yield. Plant Biotechnol. J. 16, 351-353.
|
|
Riefler, M., Novak, O., Strnad, M., Schmulling, T., 2006. Arabidopsis cytokinin receptor mutants reveal functions in shoot growth, leaf senescence, seed size, germination, root development, and cytokinin metabolism. Plant Cell 18, 40-54.
|
|
Roh, J., Park, C., Son, S., Kim, S., 2023. BES1-mediated brassinosteroid signaling negatively regulates biosynthesis and signaling of abscisic acid to increase seed size in Arabidopsis. J. Plant Biol. 66, 223-232.
|
|
Rong, C., Liu, Y., Chang, Z., Liu, Z., Ding, Y., Ding, C., 2022. Cytokinin oxidase/dehydrogenase family genes exhibit functional divergence and overlap in rice growth and development, especially in control of tillering. J. Exp. Bot. 73, 3552-3568.
|
|
Rong, W., Qi, L., Wang, A., Ye, X., Du, L., Liang, H., Xin, Z., Zhang, Z., 2014. The ERF transcription factor TaERF3 promotes tolerance to salt and drought stresses in wheat. Plant Biotechnol. J. 12, 468-479.
|
|
Roxrud, I., Lid, S., Fletcher, J., Schmidt, E., Opsahl-Sorteberg, H.G., 2007. GASA4, one of the 14-member Arabidopsis GASA family of small polypeptides, regulates flowering and seed development. Plant Cell Physiol. 48, 471-483.
|
|
Ryu, H., Kim, K., Cho, H., Park, J., Choe, S., Hwang, I., 2007. Nucleocytoplasmic shuttling of BZR1 mediated by phosphorylation is essential in Arabidopsis brassinosteroid signaling. Plant Cell 19, 2749-2762.
|
|
Sakakibara, H., 2006. Cytokinins: activity, biosynthesis, and translocation. Annu. Rev. Plant Biol. 57, 431-449.
|
|
Sasaki, A., Ashikari, M., Ueguchi-Tanaka, M., Itoh, H., Nishimura, A., Swapan, D., Ishiyama, K., Saito, T., Kobayashi, M., Khush, G.S., et al., 2002. Green revolution: a mutant gibberellin-synthesis gene in rice. Nature 416, 701-702.
|
|
Schaller, F., Schaller, A., Stintzi, A., 2004. Biosynthesis and metabolism of jasmonates. J. Plant Growth Regul. 23, 179-199.
|
|
Schruff, M.C., Spielman, M., Tiwari, S., Adams, S., Fenby, N., Scott, R.J., 2006. The AUXIN RESPONSE FACTOR 2 gene of Arabidopsis links auxin signalling, cell division, and the size of seeds and other organs. Development 133, 251-261.
|
|
Schwarz, I., Scheirlinck, M.T., Otto, E., Bartrina, I., Schmidt, R.C., Schmulling, T., 2020. Cytokinin regulates the activity of the inflorescence meristem and components of seed yield in oilseed rape. J. Exp. Bot. 71, 7146-7159.
|
|
Shen, C., Wang, S., Bai, Y., Wu, Y., Zhang, S., Chen, M., Guilfoyle, T.J., Wu, P., Qi, Y., 2010. Functional analysis of the structural domain of ARF proteins in rice (Oryza sativa L.). J. Exp. Bot. 61, 3971-3981.
|
|
Shi, C., Dong, N., Guo, T., Ye, W., Shan, J., Lin, H., 2020. A quantitative trait locus GW6 controls rice grain size and yield through the gibberellin pathway. Plant J. 103, 1174-1188.
|
|
Shi, L., Song, J., Guo, C., Wang, B., Guan, Z., Yang, P., Chen, X., Zhang, Q., King, G., Wang, J., et al., 2019. A CACTA-like transposable element in the upstream region of BnaA9.CYP78A9 acts as an enhancer to increase silique length and seed weight in rapeseed. Plant J. 98, 524-539.
|
|
Shomura, A., Izawa, T., Ebana, K., Ebitani, T., Kanegae, H., Konishi, S., Yano, M., 2008. Deletion in a gene associated with grain size increased yields during rice domestication. Nat. Genet. 40, 1023-1028.
|
|
Singh, A.K., Fu, D.Q., El-Habbak, M., Navarre, D., Ghabrial, S., Kachroo, A., 2011. Silencing genes encoding omega-3 fatty acid desaturase alters seed size and accumulation of Bean pod mottle virus in soybean. Mol. Plant-Microbe Interact. 24, 506-515.
|
|
Song, L., Liu, J., Cao, B., Liu, B., Zhang, X., Chen, Z., Dong, C., Liu, X., Zhang, Z., Wang, W., et al., 2023. Reducing brassinosteroid signalling enhances grain yield in semi-dwarf wheat. Nature 617, 118-124.
|
|
Song, X. J., 2017. Crop seed size: BR matters. Mol. Plant. 10, 668-669.
|
|
Stepanova, A.N., Yun, J., Robles, L.M., Novak, O., He, W., Guo, H., Ljung, K., Alonso, J.M., 2011. The Arabidopsis YUCCA1 flavin monooxygenase functions in the indole-3-pyruvic acid branch of auxin biosynthesis. Plant Cell 23, 3961-3973.
|
|
Sun, F., Ding, L., Feng, W., Cao, Y., Lu, F., Yang, Q., Li, W., Lu, Y., Shabek, N., Fu, F., et al., 2021. Maize transcription factor ZmBES1/BZR1-5 positively regulates kernel size. J. Exp. Bot. 72, 1714-1726.
|
|
Sun, T.P., 2011. The molecular mechanism and evolution of the GA-GID1-DELLA signaling module in plants. Curr. Biol. 21, R338-345.
|
|
Sun, X., Cahill, J., Van Hautegem, T., Feys, K., Whipple, C., Novak, O., Delbare, S., Versteele, C., Demuynck, K., De Block, J., et al., 2017. Altered expression of maize PLASTOCHRON1 enhances biomass and seed yield by extending cell division duration. Nat. Commun. 8, 14752.
|
|
Tang, S., Zhao, Z., Liu, X., Sui, Y., Zhang, D., Zhi, H., Gao, Y., Zhang, H., Zhang, L., Wang, Y., et al., 2023. An E2-E3 pair contributes to seed size control in grain crops. Nat. Commun. 14, 3091.
|
|
Tao, Y., Wang, J., Miao, J., Chen, J., Wu, S., Zhu, J., Zhang, D., Gu, H., Cui, H., Shi, S., et al., 2018. The spermine synthase OsSPMS1 regulates seed germination, grain Size, and yield. Plant Physiol. 178, 1522-1536.
|
|
Tian, X., Yu, X., Wang, Z., Guo, L., Tu, J., Shen, J., Yi, B., Fu, T., Wen, J., Ma, C., Dai, C., 2023. BnaMPK3s promote organ size by interacting with BnaARF2s in Brassica napus. Plant Biotechnol. J. 21, 899-901.
|
|
Tivendale, N., Davidson, S., Davies, N., Smith, J., Dalmais, M., Bendahmane, A., Quittenden, L., Sutton, L., Bala, R., Le Signor, C., et al., 2012. Biosynthesis of the halogenated auxin, 4-chloroindole-3-acetic acid. Plant Physiol. 159, 1055-1063.
|
|
Tong, H., Liu, L., Jin, Y., Du, L., Yin, Y., Qian, Q., Zhu, L., Chu, C., 2012. DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-Like kinase to mediate brassinosteroid responses in rice. Plant Cell 24, 2562-2577.
|
|
Vishwakarma, K., Upadhyay, N., Kumar, N., Yadav, G., Singh, J., Mishra, R., Kumar, V., Verma, R., Upadhyay, R., Pandey, M., et al., 2017. Abscisic acid signaling and abiotic stress tolerance in plants: a review on current knowledge and future prospects. Front. Plant Sci. 8, 161.
|
|
Vukasinovic, N., Wang, Y., Vanhoutte, I., Fendrych, M., Guo, B., Kvasnica, M., Jiroutova, P., Oklestkova, J., Strnad, M., Russinova, E., 2021. Local brassinosteroid biosynthesis enables optimal root growth. Nat. Plants 7, 619-632.
|
|
Wang, M., Lu, X., Xu, G., Yin, X., Cui, Y., Huang, L., Rocha, P., Xia, X., 2016. OsSGL, a novel pleiotropic stress-related gene enhances grain length and yield in rice. Sci Rep 6, 38157.
|
|
Wang, X., Chen, Y., Liu, S., Fu, W., Zhuang, Y., Xu, J., Lou, Y., Baldwin, I.T., Li, R., 2023. Functional dissection of rice jasmonate receptors involved in development and defense. New Phytol. 238, 2144-2158.
|
|
Wang, Y., Xu, J., Yu, J., Zhu, D., Zhao, Q., 2022. Maize GSK3-like kinase ZmSK2 is involved in embryonic development. Plant Sci. 318, 111221.
|
|
Wang, Y., Zou, W., Xiao, Y., Cheng, L., Liu, Y., Gao, S., Shi, Z., Jiang, Y., Qi, M., Xu, T., et al., 2018. MicroRNA1917 targets CTR4 splice variants to regulate ethylene responses in tomato. J. Exp. Bot. 69, 1011-1025.
|
|
Weng, J., Gu, S., Wan, X., Gao, H., Guo, T., Su, N., Lei, C., Zhang, X., Cheng, Z., Guo, X., et al., 2008. Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight. Cell Res. 18, 1199-1209.
|
|
Werck-Reichhart, D., Bak, S., Paquette, S., 2002. Cytochromes p450. The Arabidopsis Book 1, e0028.
|
|
Won, C., Shen, X., Mashiguchi, K., Zheng, Z., Dai, X., Cheng, Y., Kasahara, H., Kamiya, Y., Chory, J., Zhao, Y., 2011. Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF ARABIDOPSIS and YUCCAs in Arabidopsis. Proc. Natl. Acad. Sci U. S. A. 108, 18518-18523.
|
|
Wu, D., Cao, Y., Wang, D., Zong, G., Han, K., Zhang, W., Qi, Y., Xu, G., Zhang, Y., 2024. Auxin receptor OsTIR1 mediates auxin signaling during seed filling in rice. Plant Physiol. 194, 2434-2448.
|
|
Wu, Y., Fu, Y., Zhao, S., Gu, P., Zhu, Z., Sun, C., Tan, L., 2016. CLUSTERED PRIMARY BRANCH 1, a new allele of DWARF11, controls panicle architecture and seed size in rice. Plant Biotechnol. J. 14, 377-386.
|
|
Wuriyanghan, H., Zhang, B., Cao, W., Ma, B., Lei, G., Liu, Y., Wei, W., Wu, H., Chen, L., Chen, H., et al., 2009. The ethylene receptor ETR2 delays floral transition and affects starch accumulation in rice. Plant Cell 21, 1473-1494.
|
|
Xiao, Y., Liu, D., Zhang, G., Gao, S., Liu, L., Xu, F., Che, R., Wang, Y., Tong, H., Chu, C., 2019. Big Grain3, encoding a purine permease, regulates grain size via modulating cytokinin transport in rice. J. Integr. Plant Biol. 61, 581-597.
|
|
Xiao, Y., Zhang, G., Liu, D., Niu, M., Tong, H., Chu, C., 2020a. GSK2 stabilizes OFP3 to suppress brassinosteroid responses in rice. Plant J. 102, 1187-1201.
|
|
Xiao, Y., Zhang, J., Yu, G., Lu, X., Mei, W., Deng, H., Zhang, G., Chen, G., Chu, C., Tong, H., et al., 2020b. Endoplasmic reticulum-localized PURINE PERMEASE1 regulates plant height and grain weight by modulating cytokinin distribution in rice. Front. Plant Sci. 11, 618560.
|
|
Xiong, M., Feng, G.-N., Gao, Q., Zhang, C.-Q., Li, Q.-F., Liu, Q.-Q., 2022. Brassinosteroid regulation in rice seed biology. Seed Biol. 1, 1-9.
|
|
Xu, C., Liu, Y., Li, Y., Xu, X., Xu, C., Li, X., Xiao, J., Zhang, Q., 2015a. Differential expression of GS5 regulates grain size in rice. J. Exp. Bot. 66, 2611-2623.
|
|
Xu, F., Fang, J., Ou, S., Gao, S., Zhang, F., Du, L., Xiao, Y., Wang, H., Sun, X., Chu, J., et al., 2015. Variations in CYP78A13 coding region influence grain size and yield in rice. Plant Cell Environ. 38, 800-811.
|
|
Xu, H., Sun, H., Dong, J., Ma, C., Li, J., Li, Z., Wang, Y., Ji, J., Hu, X., Wu, M., et al., 2022. The brassinosteroid biosynthesis gene TaD11-2A controls grain size and its elite haplotype improves wheat grain yields. Theoretical and Applied Genetics 135, 2907-2923.
|
|
Xu, X., E, Z., Zhang, D., Yun, Q., Zhou, Y., Niu, B., Chen, C., 2021. OsYUC11-mediated auxin biosynthesis is essential for endosperm development of rice. Plant Physiol. 185, 934-950.
|
|
Yan, G., Li, S., Ma, M., Quan, C., Tian, X., Tu, J., Shen, J., Yi, B., Fu, T., Ma, C., et al., 2023. The transcription factor BnaWRKY10 regulates cytokinin dehydrogenase BnaCKX2 to control cytokinin distribution and seed size in Brassica napus. J. Exp. Bot. 74, 4994-5013.
|
|
Yan, L., Jiao, B., Duan, P., Guo, G., Zhang, B., Jiao, W., Zhang, H., Wu, H., Zhang, L., Liang, H., et al., 2024. Control of grain size and weight by the RNA-binding protein EOG1 in rice and wheat. Cell Reports 43, 114856.
|
|
Yang, C., Ma, B., He, S., Xiong, Q., Duan, K., Yin, C., Chen, H., Lu, X., Chen, S., Zhang, J., 2015. MAOHUZI6/ETHYLENE INSENSITIVE3-LIKE1 and ETHYLENE INSENSITIVE3-LIKE2 regulate ethylene response of roots and coleoptiles and negatively affect salt tolerance in rice. Plant Physiol. 169, 148-165.
|
|
Yang, T., Wang, Y., Liu, H., Zhang, W., Chai, M., Tang, G., Zhang, Z., 2020. MicroRNA1917-CTR1-LIKE PROTEIN KINASE 4 impacts fruit development via tuning ethylene synthesis and response. Plant Sci. 291, 110334.
|
|
Yang, X., Zhang, J., Wang, L., Zhang, C., Xu, P., Li, Y., Yu, S., Li, Y., 2025. BR signalling haplotypes contribute to indica-japonica differentiation for grain yield and quality in rice. Plant Biotechnol. J. 23, 1618-1636.
|
|
Ying, J.Z., Ma, M., Bai, C., Huang, X. H., Liu, J. L., Fan, Y.Y., Song, X.-J., 2018. TGW3, a major QTL that negatively modulates grain length and weight in rice. Mol. Plant. 11, 750-753.
|
|
Youssef, A., Laizet, Y., Block, M., Marechal, E., Alcaraz, J., Larson, T., Pontier, D., Gaffe, J., Kuntz, M., 2010. Plant lipid-associated fibrillin proteins condition jasmonate production under photosynthetic stress. Plant J. 61, 436-445.
|
|
Yuan, H., Fan, S., Huang, J., Zhan, S., Wang, S., Gao, P., Chen, W., Tu, B., Ma, B., Wang, Y., et al., 2017. 08SG2/OsBAK1 regulates grain size and number, and functions differently in Indica and Japonica backgrounds in rice. Rice 10, 25.
|
|
Yun, P., Li, Y., Wu, B., Zhu, Y., Wang, K., Li, P., Gao, G., Zhang, Q., Li, X., Li, Z., et al., 2022. OsHXK3 encodes a hexokinase-like protein that positively regulates grain size in rice. Theor. Appl. Genet. 135, 3417-3431.
|
|
Zalewski, W., Galuszka, P., Gasparis, S., Orczyk, W., Nadolska-Orczyk, A., 2010. Silencing of the HvCKX1 gene decreases the cytokinin oxidase/dehydrogenase level in barley and leads to higher plant productivity. J. Exp. Bot. 61, 1839-1851.
|
|
Zhan, P., Ma, S., Xiao, Z., Li, F., Wei, X., Lin, S., Wang, X., Ji, Z., Fu, Y., Pan, J., et al., 2022. Natural variations in grain length 10 (GL10) regulate rice grain size. J. Genet. Genomics 49, 405-413.
|
|
Zhang, B., Chen, H., Mu, R., Zhang, W., Zhao, M., Wei, W., Wang, F., Yu, H., Lei, G., Zou, H., et al., 2011. NIMA-related kinase NEK6 affects plant growth and stress response in Arabidopsis. Plant J. 68, 830-843.
|
|
Zhang, B., Wang, X., Zhao, Z., Wang, R., Huang, X., Zhu, Y., Yuan, L., Wang, Y., Xu, X., Burlingame, A.L., et al., 2016. OsBRI1 activates BR signaling by preventing binding between the TPR and kinase domains of OsBSK3 via phosphorylation. Plant Physiol. 170, 1149-1161.
|
|
Zhang, D., Zhang, M., Liang, J., 2021a. RGB1 regulates grain development and starch accumulation through its effect on OsYUC11-mediated auxin biosynthesis in rice endosperm cells. Front. Plant Sci. 12, 585174.
|
|
Zhang, G., Yang, J., Zhao, X., Li, Q., Wu, Y., Li, F., Wang, Y., Hao, Q., Wang, W., 2021b. Wheat TaPUB1 protein mediates ABA response and seed development through ubiquitination. Plant Sci. 309, 110913.
|
|
Zhang, H., Zhou, J., Kan, Y., Shan, J., Ye, W., Dong, N., Guo, T., Xiang, Y., Yang, Y., Li, Y., et al., 2022a. A genetic module at one locus in rice protects chloroplasts to enhance thermotolerance. Science 376, 1293-1300.
|
|
Zhang, J., Yao, J., He, K., Yu, C., Du, J., Du, J., Fu, Q., Yao, R., Howe, G.A., Han, X., et al., 2025. Jasmonate signaling coordinates with the SOD7-KLU pathway to regulate seed size in Arabidopsis thaliana. Plant Cell 37, koaf178.
|
|
Zhang, J., Zhang, X., Liu, X., Pai, Q., Wang, Y., Wu, X., 2023a. Molecular network for regulation of seed size in plants. Int. J. Mol. Sci. 24,10666.
|
|
Zhang, L., Zhao, Y., Gao, L., Zhao, G., Zhou, R., Zhang, B., Jia, J., 2012a. TaCKX6-D1, the ortholog of rice OsCKX2, is associated with grain weight in hexaploid wheat. New Phytol. 195, 574-584.
|
|
Zhang, M., Zheng, H., Jin, L., Xing, L., Zou, J., Zhang, L., Liu, C., Chu, J., Xu, M., Wang, L., 2022b. miR169o and ZmNF-YA13 act in concert to coordinate the expression of ZmYUC1 that determines seed size and weight in maize kernels. New Phytol. 235, 2270-2284.
|
|
Zhang, S., Zhu, L., Shen, C., Ji, Z., Zhang, H., Zhang, T., Li, Y., Yu, J., Yang, N., He, Y., et al., 2021c. Natural allelic variation in a modulator of auxin homeostasis improves grain yield and nitrogen use efficiency in rice. Plant Cell 33, 566-580.
|
|
Zhang, X., Wang, J., Huang, J., Lan, H., Wang, C., Yin, C., Wu, Y., Tang, H., Qian, Q., Li, J., et al., 2012b. Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice. Proc. Natl. Acad. Sci. U. S. A. 109, 21534-21539.
|
|
Zhang, Y., Berman, A., Shani, E., 2023b. Plant hormone transport and localization: signaling molecules on the move. Annu. Rev. Plant Biol. 74, 453-479.
|
|
Zhang, Y., Du, L., Xu, R., Cui, R., Hao, J., Sun, C., Li, Y., 2015. Transcription factors SOD7/NGAL2 and DPA4/NGAL3 act redundantly to regulate seed size by directly repressing KLU expression in Arabidopsis thaliana. Plant Cell 27, 620-632.
|
|
Zhang, Z., Yao, W., Dong, N., Liang, H., Liu, H., Huang, R., 2007. A novel ERF transcription activator in wheat and its induction kinetics after pathogen and hormone treatments. J. Exp. Bot. 58, 2993-3003.
|
|
Zhang, Z., Li, J., Tang, Z., Sun, X., Zhang, H., Yu, J., Yao, G., Li, G., Guo, H., Li, J., et al., 2018. Gnp4/LAX2, a RAWUL protein, interferes with the OsIAA3-OsARF25 interaction to regulate grain length via the auxin signaling pathway in rice. J. Exp. Bot. 69, 4723-4737.
|
|
Zhao, B., Dai, A., Wei, H., Yang, S., Wang, B., Jiang, N., Feng, X., 2016. Arabidopsis KLU homologue GmCYP78A72 regulates seed size in soybean. Plant Mol. Biol. 90, 33-47.
|
|
Zhao, C., Yaschenko, A., Alonso, J.M., Stepanova, A.N., 2021a. Leveraging synthetic biology approaches in plant hormone research. Curr. Opin. Plant Biol. 60, 101998.
|
|
Zhao, H., Yin, C., Ma, B., Chen, S., Zhang, J., 2021b. Ethylene signaling in rice and Arabidopsis: New regulators and mechanisms. J. Integr. Plant Biol. 63, 102-125.
|
|
Zhao, J., Wu, C., Yuan, S., Yin, L., Sun, W., Zhao, Q., Zhao, B., Li, X., 2013. Kinase activity of OsBRI1 is essential for brassinosteroids to regulate rice growth and development. Plant Sci. 199, 113-120.
|
|
Zhou, C., Lin, Q., Ren, Y., Lan, J., Miao, R., Feng, M., Wang, X., Liu, X., Zhang, S., Pan, T., et al., 2023. A CYP78As-small grain4-coat protein complex Ⅱ pathway promotes grain size in rice. Plant Cell 35, 4325-4346.
|
|
Zhou, Y., Tao, Y., Zhu, J., Miao, J., Liu, J., Liu, Y., Yi, C., Yang, Z., Gong, Z., Liang, G., 2017. GNS4, a novel allele of DWARF11, regulates grain number and grain size in a high-yield rice variety. Rice 10, 34.
|
|
Zhou, Y., Zhang, X., Kang, X., Zhao, X., Zhang, X., Ni, M., 2009. SHORT HYPOCOTYL UNDER BLUE1 associates with MINISEED3 and HAIKU2 promoters in vivo to regulate Arabidopsis seed development. Plant Cell 21, 106-117.
|
|
Zhu, B., Zhang, Y., Gao, R., Wu, Z., Zhang, W., Zhang, C., Zhang, P., Ye, C., Yao, L., Jin, Y., et al., 2025. Complete biosynthesis of salicylic acid from phenylalanine in plants. Nature 645, 218-227.
|
|
Zhu, X., Liang, W., Cui, X., Chen, M., Yin, C., Luo, Z., Zhu, J., Lucas, W.J., Wang, Z., Zhang, D., 2015. Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein. Plant J. 82, 570-581.
|
|
Zuo, J., Li, J., 2014. Molecular genetic dissection of quantitative trait loci regulating rice grain size. Ann. Rev. Genet. 48, 99-118.
|