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2015年  第42卷  第12期

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The Epigenetic Reprogramming Roadmap in Generation of iPSCs from Somatic Cells
Jacob Brix, Yan Zhou, Yonglun Luo
2015, 42(12): 661-670. doi: 10.1016/j.jgg.2015.10.001
摘要:
Reprogramming of somatic cells to induced pluripotent stem cells (iPSCs) is a comprehensive epigenetic process involving genome-wide modifications of histones and DNA methylation. This process is often incomplete, which subsequently affects iPSC reprograming, pluripotency, and differentiation capacity. Here, we review the epigenetic changes with a focus on histone modification (methylation and acetylation) and DNA modification (methylation) during iPSC induction. We look at changes in specific epigenetic signatures, aberrations and epigenetic memory during reprogramming and small molecules influencing the epigenetic reprogramming of somatic cells. Finally, we discuss how to improve iPSC generation and pluripotency through epigenetic manipulations.
Deletion of Mitochondrial Porin Alleviates Stress Sensitivity in the Yeast Model of Shwachman-Diamond Syndrome
Waruenada Kanprasoet, Laran T. Jensen, Suwimon Sriprach, Kanate Thitiananpakorn, Khanti Rattanapornsompong, Amornrat Naranuntarat Jensen
2015, 42(12): 671-684. doi: 10.1016/j.jgg.2015.09.004
摘要:
Shwachman-Diamond syndrome (SDS) is a multi-system disorder characterized by bone marrow failure, pancreatic insufficiency, skeletal abnormalities, and increased risk of leukemic transformation. Most patients with SDS contain mutations in the Shwachman-Bodian-Diamond syndrome gene (SBDS), encoding a highly conserved protein that has been implicated in ribosome biogenesis. Emerging evidence also suggests a distinct role of SBDS beyond protein translation. Using the yeast model of SDS, we examined the underlying mechanisms that cause cells lacking Sdo1p, the yeast SBDS ortholog, to exhibit reduced tolerance to various stress conditions. Our analysis indicates that the environmental stress response (ESR), heat shock response (HSR), and endoplasmic reticulum unfolded protein response (UPR) of sdo1Δ cells are functional and that defects in these pathways do not produce the phenotypes observed in sdo1Δ yeast. Depletion of mitochondrial DNA (mtDNA) was observed in sdo1Δ cells, and this is a probable cause of the mitochondrial insufficiency in SDS. Prior disruption of POR1, encoding the mitochondrial voltage dependent anion channel (VDAC), abrogated the effects of SDO1 deletion and substantially restored resistance to environmental stressors and protected against damage to mtDNA. Conversely, wild-type cells over-expressing POR1 exhibited growth impairment and increased stress sensitivity similar to that seen in sdo1Δ cells. Overall, our results suggest that specific VDAC inhibitors may have therapeutic benefits for SDS patients.
Characterization of a Putative New Semi-Dominant Reduced Height Gene, Rht_NM9, in Wheat (Triticum aestivum L.)
Yuan Lu, Liping Xing, Shujuan Xing, Ping Hu, Chaofan Cui, Mingyi Zhang, Jin Xiao, Haiyan Wang, Ruiqi Zhang, Xiue Wang, Peidu Chen, Aizhong Cao
2015, 42(12): 685-698. doi: 10.1016/j.jgg.2015.08.007
摘要:
Plant height is an important agronomic trait in cereal crops, and can affect both plant architecture and grain yield. New dwarfing genes are required for improving the genetic diversity of wheat. In this study, a novel dwarf mutant, NM9, was created by treating seeds of the wheat variety NAU9918 with ethyl methanesulfonate (EMS). NM9 showed obvious phenotypic changes, which were distinct from those caused by other dwarfing genes, especially the reduced plant height, increased effective tiller number, and elongated spike and grain length. The reduced plant height in NM9 was attributable to a semi-dominant dwarfing gene Rht_NM9, which was flanked by two closely linked SNP markers, SNP34 and SNP41, covering an 8.86-Mb region on the chromosome arm 2AS. The results of gibberellic acid (GA) sensitivity evaluation, comparative genomics analysis and allelism test indicated that Rht_NM9 was neither allelic to Rht7 and Rht21 nor homoeoallelic to Rht8, so Rht_NM9 was proposed to be a new dwarfing locus on the homoeologous group 2 chromosomes of wheat. Rht_NM9 has a negative effect on plant height and positive effects on effective tiller number and grain size, thus, Rht_NM9 could be used for elucidating the mechanisms underlying plant architecture and grain development.
Isolation and Identification of a Functional Centromere Element in the Wild Rice Species Oryza granulata with the GG Genome
Chuandeng Yi, Mingsen Wang, Wei Jiang, Derong Wang, Yong Zhou, Zhiyun Gong, Guohua Liang, Minghong Gu
2015, 42(12): 699-702. doi: 10.1016/j.jgg.2015.09.009
摘要:
A Simple CRISPR/Cas9 System for Multiplex Genome Editing in Rice
Chun Wang, Lan Shen, Yaping Fu, Changjie Yan, Kejian Wang
2015, 42(12): 703-706. doi: 10.1016/j.jgg.2015.09.011
摘要:
Genome-Wide Analysis and Expression Patterns of the YUCCA Genes in Maize
Wenlan Li, Xiangyu Zhao, Xiansheng Zhang
2015, 42(12): 707-710. doi: 10.1016/j.jgg.2015.06.010
摘要: