5.9
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5.9
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2012 Vol. 39, No. 3

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Review
Current Advances in Epigenetic Modification and Alteration during Mammalian Ovarian Folliculogenesis
Zengxiang Pan, Jinbi Zhang, Qifa Li, Yinxia Li, Fangxiong Shi, Zhuang Xie, Honglin Liu
2012, 39(3): 111-123. doi: 10.1016/j.jgg.2012.02.004
Abstract (82) HTML PDF (0)
Abstract:
During the growth and development of mammalian ovarian follicles, the activation and deactivation of mass genes are under the synergistic control of diverse modifiers through genetic and epigenetic events. Many factors regulate gene activity and functions through epigenetic modification without altering the DNA sequence, and the common mechanisms may include but are not limited to: DNA methylation, histone modifications (e.g., acetylation, deacetylation, phosphorylation, methylation, and ubiquitination), and RNA-associated silencing of gene expression by noncoding RNA. Over the past decade, substantial progress has been achieved in studies involving the epigenetic alterations during mammalian germ cell development. A number of candidate regulatory factors have been identified. This review focuses on the current available information of epigenetic alterations (e.g., DNA methylation, histone modification, noncoding-RNA-mediated regulation) during mammalian folliculogenesis and recounts when and how epigenetic patterns are differentially established, maintained, or altered in this process. Based on different types of epigenetic regulation, our review follows the temporal progression of events during ovarian folliculogenesis and describes the epigenetic changes and their contributions to germ cell–specific functions at each stage (i.e., primordial folliculogenesis (follicle formation), follicle maturation, and follicular atresia).
Dicentric Chromosome Formation and Epigenetics of Centromere Formation in Plants
Shulan Fu, Zhi Gao, James Birchler, Fangpu Han
2012, 39(3): 125-130. doi: 10.1016/j.jgg.2012.01.006
Abstract (67) HTML PDF (0)
Abstract:
Plant centromeres are generally composed of tandem arrays of simple repeats that form a complex chromosome locus where the kinetochore forms and microtubules attach during mitosis and meiosis. Each chromosome has one centromere region, which is essential for accurate division of the genetic material. Recently, chromosomes containing two centromere regions (called dicentric chromosomes) have been found in maize and wheat. Interestingly, some dicentric chromosomes are stable because only one centromere is active and the other one is inactivated. Because such arrays maintain their typical structure for both active and inactive centromeres, the specification of centromere activity has an epigenetic component independent of the DNA sequence. Under some circumstances, the inactive centromeres may recover centromere function, which is called centromere reactivation. Recent studies have highlighted the important changes, such as DNA methylation and histone modification, that occur during centromere inactivation and reactivation.
Original Research
Evaluating the Phylogenetic Position of Chinese Tree Shrew (Tupaia belangeri chinensis) Based on Complete Mitochondrial Genome: Implication for Using Tree Shrew as an Alternative Experimental Animal to Primates in Biomedical Research
Ling Xu, Shi-Yi Chen, Wen-Hui Nie, Xue-Long Jiang, Yong-Gang Yao
2012, 39(3): 131-137. doi: 10.1016/j.jgg.2012.02.003
Abstract (103) HTML PDF (3)
Abstract:
Tree shrew (Tupaia belangeri) is currently placed in Order Scandentia and has a wide distribution in Southeast Asia and Southwest China. Due to its unique characteristics, such as small body size, high brain-to-body mass ratio, short reproductive cycle and life span, and low-cost of maintenance, tree shrew has been proposed to be an alternative experimental animal to primates in biomedical research. However, there are some debates regarding the exact phylogenetic affinity of tree shrew to primates. In this study, we determined the mtDNA entire genomes of three Chinese tree shrews (T. belangeri chinensis) and one Malayan flying lemur (Galeopterus variegatus). Combined with the published data for species in Euarchonta, we intended to discern the phylogenetic relationship among representative species of Dermoptera, Scandentia and Primates. The mtDNA genomes of Chinese tree shrews and Malayan flying lemur shared similar gene organization and structure with those of other mammals. Phylogenetic analysis based on 12 concatenated mitochondrial protein-encoding genes revealed a closer relationship between species of Scandentia and Glires, whereas species of Dermoptera were clustered with Primates. This pattern was consistent with previously reported phylogeny based on mtDNA data, but differed from the one reconstructed on the basis of nuclear genes. Our result suggested that the matrilineal affinity of tree shrew to primates may not be as close as we had thought. The ongoing project for sequencing the entire genome of Chinese tree shrew will provide more information to clarify this important issue.
The Altered Responses of a New Mutant long life span 1 to Cytokinin in Arabidopsis thaliana
Xinghua Shao, Ru Yang, Jingyu Wang, Qi Fang, Bin Yao, Yang Wang, Yue Sun, Xiaofang Li
2012, 39(3): 139-148. doi: 10.1016/j.jgg.2011.10.005
Abstract (72) HTML PDF (1)
Abstract:
Cytokinins are a class of essential plant hormones regulating plant growth and development. Although the two-component phosphorelay pathway of cytokinin has been well characterized, the intact cytokinin responses regulation picture still needs to be fully depicted. Here we report a new mutant, long life span 1 (lls1), which displays dwarf stature, curled leaves, numerous axillary branches and nearly 5-month life span. Exogenous cytokinin could not recover the phenotypes of the mutant. Moreover, mutation in lls1 suppressed the cytokinin-responsive phenotypes, including root and hypocotyl growth inhibition, anthocyanin accumulation, metaxylem promotion in primary root development. The induction of cytokinin-responsive genes, ARR5, AHP5, and CKX3, was also suppressed in lls1. According to quantitative RT-PCR (qRT-PCR) and microarray results, the basal expression of positive factors AHP5, ARR1, and ARR10 were down-regulated, while the negative factors ARR4 and ARR5 were up-regulated. Our results suggested that LLS1 gene might be involved in the regulation of cytokinin signaling. It was mapped to chromosome 4 where no other cytokinin relevant gene has been reported.
The Upregulation of NtAN2 Expression at Low Temperature is Required for Anthocyanin Accumulation in Juvenile Leaves of Lc-transgenic Tobacco (Nicotiana tabacum L.)
Zong-An Huang, Ting Zhao, Hua-Jie Fan, Ning Wang, Shu-Song Zheng, Hong-Qing Ling
2012, 39(3): 149-156. doi: 10.1016/j.jgg.2012.01.007
Abstract (61) HTML PDF (2)
Abstract:
Anthocyanins often accumulate in plants subjected to environmental stress, including low temperature. However, the molecular regulatory mechanism of anthocyanin biosynthesis at low temperature is largely unknown. Here, tobacco was transformed with a maize anthocyanin regulatory gene Lc driven by AtSPX3 promoter to investigate the effect of Lc upon the anthocyanin-biosynthesis pathway. We found that the anthocyanin-biosynthesis pathway could not be activated in wild type, while Lc-transgenic tobacco lines exhibited purple pigmentation in juvenile leaves at low temperature. Accordingly, the total anthocyanin contents increased specifically in juvenile leaves in Lc-transgenic lines. Transcriptional analysis showed that NtCHS and NtCHI were induced by low temperature in leaves of wild type and transgenic lines. NtDFR was uniquely expressed in Lc-transgenic lines, but its transcript was not detected in wild type, implying that NtDFR expression in tobacco leaves was dependent on Lc. Furthermore, the expression of NtAN2 (regulatory gene) and NtANS (anthocyanidin synthase gene) was coordinately upregulated in Lc-transgenic lines under low temperature, suggesting that both Lc and NtAN2 might activate the expression of NtANS. Based on our findings and previous reports, we postulated that Lc interacted with NtAN2 induced by low-temperature stress and consequently stimulated anthocyanin biosynthesis in juvenile leaves of Lc-transgenic tobacco lines.
Erratum
Erratum to “Identification of Compatibility between Ooplasmic Factor and Sperm Gene in the Intersubspecific Crosses Involving DDK and PWK Mice Strains” [Journal of Genetics and Genomics (2011) 38, 525–531]
Gendi Song, Tingting Wang, Jie Guo, Jian Lei, Chunli Li, Zhenyu Zheng, Weidong Zhao
2012, 39(3) doi: 10.1016/j.jgg.2012.02.007
Abstract (36) HTML PDF (0)
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