5.9
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5.9
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2014 Vol. 41, No. 4

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Original research
Frequent Mutation of rs13281615 and Its Association with PVT1 Expression and Cell Proliferation in Breast Cancer
Zhiqian Zhang, Zhengmao Zhu, Baotong Zhang, Weidong Li, Xin Li, Xiao Wu, Lijuan Wang, Liya Fu, Li Fu, Jin-Tang Dong
2014, 41(4): 187-195. doi: 10.1016/j.jgg.2014.03.006
Abstract (54) HTML PDF (0)
Abstract:
The q24 band of chromosome 8 (8q24) is frequently amplified in human cancers including breast cancer, and several SNPs (single nucleotide polymorphisms) at 8q24, including rs13281615, have been identified for their association with cancer risks. These SNPs are in a “gene desert” region, and their functions in cancer development remain to be illustrated, although several of the SNPs appear to influence the genes in the “desert” in a long-range manner, including the v-myc avian myelocytomatosis viral oncogene homolog (MYC) and the non-protein coding plasmacytoma variant translocation 1 (PVT1), both of which have been implicated in human cancers. In the current study, we examined rs13281615 for its potential role in breast cancer using normal and cancer tissues from 121 Chinese women with breast cancer. In addition to confirming the association of the GG genotype of rs13281615 with breast cancer risk, we found that germline GG genotype was significantly associated with estrogen receptor (ER) positivity, higher tumor grade and higher proliferation index. We also found frequent somatic mutations (22/121 or 18.2%) of this SNP in breast cancer. Interestingly, the majority of the mutations (17/22 or 77%) involved a G→A change, resulting in a decrease in the number of cancers with the GG risk genotype and subsequent loss of GG association with higher tumor grade and proliferation index in cancers. Furthermore,PVT1 expression was increased in cancers, and the increase was associated with the GG genotype of rs13281615. These results suggest that the GG genotype of SNP rs13281615 plays a role in breast cancer likely by influencing PVT1 expression, and that during oncogenesis, “protective” mutations could occur.
Genetic Analysis of 17 Children with Hunter Syndrome: Identification and Functional Characterization of Four Novel Mutations in the Iduronate-2-Sulfatase Gene
Dimitry A. Chistiakov, Lyudmila M. Kuzenkova, Kirill V. Savost'anov, Anait K. Gevorkyan, Alexander A. Pushkov, Alexey G. Nikitin, Nato D. Vashakmadze, Natalia V. Zhurkova, Tatiana V. Podkletnova, Leila S. Namazova-Baranova, Alexander A. Baranov
2014, 41(4): 197-203. doi: 10.1016/j.jgg.2014.01.007
Abstract (56) HTML PDF (1)
Abstract:
Mucopolysaccharidosis type II (MPS II) is a rare X-linked disorder caused by alterations in the iduronate-2-sulfatase (IDS) gene. In this study, IDS activity in peripheral mononuclear blood monocytes (PMBCs) was measured with a fluorimetric enzyme assay. Urinary glycosaminoglycans (GAGs) were quantified using a colorimetric assay. AllIDS exons and intronic flanks were bidirectionally sequenced. A total of 15 mutations (all exonic region) were found in 17 MPS II patients. In this cohort of MPS II patients, all alterations in the IDS gene were caused by point nucleotide substitutions or small deletions. Mutations p.Arg88His and p.Arg172* occurred twice. All mutations were inherited except for p.Gly489Alafs*7, a germline mutation. We found four new mutations (p.Ser142Phe, p.Arg233Gly, p.Glu430*, and p.Ile360Tyrfs*31). In Epstein-Barr virus (EBV)-immortalized PMBCs derived from the MPS II patients, no IDS protein was detected in case of the p.Ser142Phe and p.Ile360Tyrfs*31 mutants. For p.Arg233Gly and p.Glu430*, we observed a residual expression of IDS. The p.Arg233Gly and p.Glu430* mutants had a residuary enzymatic activity that was lowered by 14.3 and 76-fold, respectively, compared with healthy controls. This observation may help explain the mild disease phenotype in MPS II patients who had these two mutations whereas the p.Ser142Phe and p.Ile360Tyrfs*31 mutations caused the severe disease manifestation.
Molecular Cytogenetic Characterization of a Wheat – Leymus mollis 3D(3Ns) Substitution Line with Resistance to Leaf Rust
Yuhui Pang, Xinhong Chen, Jixin Zhao, Wanli Du, Xueni Cheng, Jun Wu, Yanli Li, Liangming Wang, Jing Wang, Qunhui Yang
2014, 41(4): 205-214. doi: 10.1016/j.jgg.2013.11.008
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Abstract:
Leymus mollis (Trin.) Pilger (NsNsXmXm, 2n = 28), a wild relative of common wheat, possesses many potentially valuable traits that could be transferred to common wheat during breeding programs. In this study, the karyotypic constitution of a wheat – L. mollis 3D(3Ns#1) disomic substitution line isolated from the F5 progeny of octoploid Tritileymus M842-16 × Triticum durum cv. D4286, which was designated as 10DM57, was determined using genomic in situ hybridization (GISH), fluorescent in situ hybridization (FISH), SSR markers, and EST-STS markers. Screening of mitosis and meiosis showed that 10DM57 had a chromosome karyotype of 2n = 42 = 21II. GISH indicated that 10DM57 was a line with 40 chromosomes from wheat and two of the Ns chromosomes from L. mollis, which formed a ring bivalent in pollen mother cells at metaphase I. FISH analysis showed that the chromosome 3D may be replaced by 3Ns#1 in 10DM57. DNA markers, including SSR and EST-STS primers, showed that the pair of wheat chromosome 3D in 10DM57 was substituted by the pair of chromosome 3Ns#1 from L. mollis. Evaluation of the agronomic traits showed that, compared with its common wheat relative 7182, 10DM57 was resistant to leaf rust while the spike length and number of spikes per plant were improved significantly, which correlated with a higher wheat yield. The new germplasm, 10DM57, could be exploited as an intermediate material in wheat genetic and breeding programs.
Letter to the Editor
Mutagenesis at Specific Genomic Loci of Amphioxus Branchiostoma belcheri Using TALEN Method
Guang Li, Jun Feng, Yong Lei, Jing Wang, Hui Wang, Liü-Ke Shang, Dong-Teng Liu, Hui Zhao, Yong Zhu, Yi-Quan Wang
2014, 41(4): 215-219. doi: 10.1016/j.jgg.2014.02.003
Abstract (59) HTML PDF (1)
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Egg-derived tyrosine phosphatase as a Potential Biomarker for Muscle Ageing and Degeneration in Drosophila melanogaster
Salam Herojeet Singh, Nallur B. Ramachandra, Upendra Nongthomba
2014, 41(4): 221-224. doi: 10.1016/j.jgg.2014.01.008
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The Role of Autophagy during Development of the Oomycete Pathogen Phytophthora infestans
Qian Luo, Fu-Xin Wang, Nai-Qin Zhong, Hai-Yun Wang, Gui-Xian Xia
2014, 41(4): 225-228. doi: 10.1016/j.jgg.2014.03.004
Abstract (50) HTML PDF (0)
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