5.9
CiteScore
5.9
Impact Factor

2018 Vol. 45, No. 6

Review
Advances in the development of molecular genetic tools for Mycobacterium tuberculosis
Chiranjibi Chhotaray, Yaoju Tan, Julius Mugweru, Md Mahmudul Islam, H.M. Adnan Hameed, Shuai Wang, Zhili Lu, Changwei Wang, Xinjie Li, Shouyong Tan, Jianxiong Liu, Tianyu Zhang
2018, 45(6): 281-297. doi: 10.1016/j.jgg.2018.06.003
Abstract (52) HTML PDF (7)
Abstract:
Mycobacterium tuberculosis, a Gram-positive bacterium of great clinical relevance, is a lethal pathogen owing to its complex physiological characteristics and development of drug resistance. Several molecular genetic tools have been developed in the past few decades to study this microorganism. These tools have been instrumental in understanding how M. tuberculosis became a successful pathogen. Advanced molecular genetic tools have played a significant role in exploring the complex pathways involved in M. tuberculosis pathogenesis. Here, we review various molecular genetic tools used in the study of M. tuberculosis. Further, we discuss the applications of clustered regularly interspaced short palindromic repeat interference (CRISPRi), a novel technology recently applied in M. tuberculosis research to study target gene functions. Finally, prospective outcomes of the applications of molecular techniques in the field of M. tuberculosis genetic research are also discussed.
Original research
Collagen secretion screening in Drosophila supports a common secretory machinery and multiple Rab requirements
Hongmei Ke, Zhi Feng, Min Liu, Tianhui Sun, Jianli Dai, Mengqi Ma, Lu-Ping Liu, Jian-Quan Ni, José Carlos Pastor-Pareja
2018, 45(6): 299-313. doi: 10.1016/j.jgg.2018.05.002
Abstract (72) HTML PDF (3)
Abstract:
Collagens are large secreted trimeric proteins making up most of the animal extracellular matrix. Secretion of collagen has been a focus of interest for cell biologists in recent years because collagen trimers are too large and rigid to fit into the COPII vesicles mediating transport from the endoplasmic reticulum (ER) to the Golgi. Collagen-specific mechanisms to create enlarged ER-to-Golgi transport carriers have been postulated, including cargo loading by conserved ER exit site (ERES) protein Tango1. Here, we report an RNAi screening for genes involved in collagen secretion in Drosophila. In this screening, we examined distribution of GFP-tagged Collagen IV in live animals and found 88 gene hits for which the knockdown produced intracellular accumulation of Collagen IV in the fat body, the main source of matrix proteins in the larva. Among these hits, only two affected collagen secretion specifically: PH4αEFB and Plod, encoding enzymes known to mediate posttranslational modification of collagen in the ER. Every other intracellular accumulation hit affected general secretion, consistent with the notion that secretion of collagen does not use a specific mode of vesicular transport, but the general secretory pathway. Included in our hits are many known players in the eukaryotic secretory machinery, like COPII and COPI components, SNAREs and Rab-GTPase regulators. Our further analysis of the involvement of Rab-GTPases in secretion shows that Rab1, Rab2 and RabX3, are all required at ERES, each of them differentially affecting ERES morphology. Abolishing activity of all three by Rep knockdown, in contrast, led to uncoupling of ERES and Golgi. We additionally present a characterization of a screening hit we namedtrabuco (tbc), encoding an ERES-localized TBC domain-containing Rab-GAP. Finally, we discuss the success of our screening in identifying secretory pathway genes in comparison to two previous secretion screenings in Drosophila S2 cells.
Caudal dorsal artery generates hematopoietic stem and progenitor cells via the endothelial-to-hematopoietic transition in zebrafish
Yandong Zhan, Youkui Huang, Jingying Chen, Zigang Cao, Jianbo He, Jingjing Zhang, Honghui Huang, Hua Ruan, Lingfei Luo, Li Li
2018, 45(6): 315-324. doi: 10.1016/j.jgg.2018.02.010
Abstract (75) HTML PDF (3)
Abstract:
Zebrafish hematopoietic stem and progenitor cells (HSPCs) originate from the hemogenic endothelium of the ventral wall of the dorsal aorta (DA) through the endothelial-to-hematopoietic transition (EHT) from approximately 30 to 60 hours post fertilization (hpf). However, whether other artery sites can generate HSPCs de novo remains unclear. In this study, using live imaging and lineage tracing, we found that the caudal dorsal artery (CDA) in the caudal hematopoietic tissue directly gave rise to HSPCs through EHT. This process initiated from approximately 60 hpf and terminated at approximately 156 hpf. Compared with that in the DA, fewer EHT events were observed in the CDA. The EHT events in the DA and CDA were similarly regulated by Runx1 but differentially influenced by blood flow (i.e., the EHT frequency in CDA was affected to a lesser extent when circulation was compromised in thetnnt2a mutant). Therefore, the whole artery, including both DA and CDA, was endowed with the ability to produce HSPCs during a much longer time period. Coincidently, the lineage tracing results indicated that adult hematopoietic cells originated from the embryonic endothelium, and those produced later preferentially colonized the adult thymus. Collectively, our study revealed that the CDA serves as an additional source of hematopoiesis, and it shows similar but not identical properties with the DA.
Technical advance
Generation of rat-mouse chimeras by introducing single cells of rat inner cell masses into mouse blastocysts
Tianda Li, Leyun Wang, Xinxin Zhang, Liyuan Jiang, Yufei Li, Junjie Mao, Tongtong Cui, Wei Li, Liu Wang, Qi Zhou
2018, 45(6): 325-328. doi: 10.1016/j.jgg.2018.03.006
Abstract (64) HTML PDF (3)
Abstract:
Letter to the editor
Functional non-homologous end joining patterns triggered by CRISPR/Cas9 in human cells
Fayu Yang, Xianglian Ge, Xiubin He, Xiexie Liu, Chenchen Zhou, Huihui Sun, Junsong Zhang, Junzhao Zhao, Zongming Song, Jia Qu, Changbao Liu, Feng Gu
2018, 45(6): 329-332. doi: 10.1016/j.jgg.2018.02.009
Abstract (70) HTML PDF (2)
Abstract:
Validation of the diagnostic potential of mtDNA copy number derived from whole genome sequencing
Rachel Brockhage, Jesse Slone, Zeqian Ma, Madhuri R. Hegde, C. Alexander Valencia, Taosheng Huang
2018, 45(6): 333-335. doi: 10.1016/j.jgg.2018.06.001
Abstract (62) HTML PDF (5)
Abstract:
The rational design of multiple molecular module-based assemblies for simultaneously improving rice yield and grain quality
Kun Wu, Xiaopeng Xu, Nan Zhong, Haixiang Huang, Jianping Yu, Yafeng Ye, Yuejin Wu, Xiangdong Fu
2018, 45(6): 337-341. doi: 10.1016/j.jgg.2018.03.007
Abstract (57) HTML PDF (7)
Abstract: