5.9
CiteScore
5.9
Impact Factor

2018 Vol. 45, No. 8

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Original research
Genome-wide variants of Eurasian facial shape differentiation and a prospective model of DNA based face prediction
Lu Qiao, Yajun Yang, Pengcheng Fu, Sile Hu, Hang Zhou, Shouneng Peng, Jingze Tan, Yan Lu, Haiyi Lou, Dongsheng Lu, Sijie Wu, Jing Guo, Li Jin, Yaqun Guan, Sijia Wang, Shuhua Xu, Kun Tang
2018, 45(8): 419-432. doi: 10.1016/j.jgg.2018.07.009
Abstract (77) HTML PDF (4)
Abstract:
It is a long-standing question as to which genes define the characteristic facial features among different ethnic groups. In this study, we use Uyghurs, an ancient admixed population to query the genetic bases why Europeans and Han Chinese look different. Facial traits were analyzed based on high-dense 3D facial images; numerous biometric spaces were examined for divergent facial features between European and Han Chinese, ranging from inter-landmark distances to dense shape geometrics. Genome-wide association studies (GWAS) were conducted on a discovery panel of Uyghurs. Six significant loci were identified, four of which, rs1868752, rs118078182, rs60159418 at or near UBASH3B, COL23A1, PCDH7 and rs17868256 were replicated in independent cohorts of Uyghurs or Southern Han Chinese. A prospective model was also developed to predict 3D faces based on top GWAS signals and tested in hypothetic forensic scenarios.
Mid1ip1b modulates apical reorientation of non-centrosomal microtubule organizing center in epithelial cells
Xin Zhou, Chun Xiao, Yu Li, Yanna Shang, Dongqin Yin, Siying Li, Bo Xiang, Ran Lu, Yi Ji, Yang Wu, Wentong Meng, Hongyan Zhu, Jin Liu, Huozhen Hu, Xianming Mo, Hong Xu
2018, 45(8): 433-442. doi: 10.1016/j.jgg.2018.08.001
Abstract (55) HTML PDF (3)
Abstract:
In most kinds of animal cells, the centrosome serves as the main microtubule organizing center (MTOC) that nucleates microtubule arrays throughout the cytoplasm to maintain cell structure, cell division and intracellular transport. Whereas in epithelial cells, non-centrosomal MTOCs are established in the apical domain for generating asymmetric microtubule fibers and cilia in epithelial cells for the organ morphogenesis during embryonic development. However, the mechanism by which MTOCs localize to the apical domain in epithelial cells remains largely unknown. Here, we show that Mid1ip1b has a close interaction with γ-tubulin protein, the central component of MTOC, and modulates lumen opening of the neural tube, gut, intestine, and kidney of zebrafish. Knockdown or dominant negative effect of Mid1ip1b resulted in failure of lumen formation of the organs as aforementioned. Moreover, the non-centrosomal MTOCs were unable to orientate to the apical domain in Mid1ip1b knockdown epithelial cells, and the centrosomal MTOCs were inaccurately placed in the apical domain, resulting in defective formation of asymmetric microtubules and misplacement of cilia in the apical domain. These data uncover a molecule that controls the proper localization of MTOCs in the apical domain in epithelial cells for organ morphogenesis during embryonic development.
prpf4 is essential for cell survival and posterior lateral line primordium migration in zebrafish
Yixia Wang, Yanchao Han, Pengfei Xu, Shihui Ding, Guangyuan Li, Hongbin Jin, Yaping Meng, Anming Meng, Shunji Jia
2018, 45(8): 443-453. doi: 10.1016/j.jgg.2018.05.008
Abstract (84) HTML PDF (3)
Abstract:
Prpf4 (pre-mRNA processing factor 4), a key component of spliceosome, plays critical roles in pre-mRNA splicing and its mutations result in retinitis pigmentosa due to photoreceptor defects. In this study, we characterized a zebrafish prpf4 mutant harboring a Tol2 transposon-based gene trap cassette in the third intron of the prpf4 gene. Cells in the brain and spinal cord gradually undergo p53-dependent apoptosis after 28 hpf in prpf4 mutants, suggesting that a widespread function of prpf4 in neural cell survival. In addition, prpf4 is essential for survival of posterior lateral line primordial (pLLP) cells. prpf4 deficiency perturbs Fgf, Wnt/β-catenin and chemokine signaling pathways and impairs pLLP migration. RNA-Seq analysis suggests that prpf4 deficiency may impair spliceosome assembly, leading to compensatory upregulation of core spliceosomal genes and alteration of pre-mRNA splicing. Taken together, our studies uncover an essential role of prpf4 in pre-mRNA splicing, cell survival and pLLP migration.
Letter to the editor
Efficient and fast identification of differentially methylated regions using whole-genome bisulfite sequencing data
Dinh Diep, Kun Zhang
2018, 45(8): 455-457. doi: 10.1016/j.jgg.2018.07.008
Abstract (72) HTML PDF (2)
Abstract:
Overexpression of the nuclear protein gene AtDUF4 increases organ size in Arabidopsis thaliana and Brassica napus
Guangxia Chen, Xi Cao, Zhaoxia Ma, Yu Tang, Yuejuan Zeng, Liqun Chen, De Ye, Xue-Qin Zhang
2018, 45(8): 459-462. doi: 10.1016/j.jgg.2018.05.009
Abstract (70) HTML PDF (4)
Abstract:
Construction and application of oligo-based FISH karyotype of Haynaldia villosa
Haojie Sun, Jingjing Song, Jia Lei, Xinying Song, Keli Dai, Jin Xiao, Chunxia Yuan, Shengmin An, Haiyan Wang, Xiue Wang
2018, 45(8): 463-466. doi: 10.1016/j.jgg.2018.06.004
Abstract (88) HTML PDF (8)
Abstract: