Journal of Genetics and Genomics

Special Issue on SpatioTemporal Omics

Edited by Naihe Jing, Xun Xu, Bing Liu, Ge Gao
Volume 50, Issue 9,
Pages 625-734 (September 2023)

Spatially resolved transcriptomics: a comprehensive review of their technological advances, applications, and challenges

Mengnan Cheng, Yujia Jiang, Jiangshan Xu, Alexios-Fotios A. Mentis, Shuai Wang, Huiwen Zheng, Sunil Kumar Sahu, Longqi Liu, Xun Xu

2023, 50(9): 625 doi: 10.1016/j.jgg.2023.03.011

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Laser capture microdissection for biomedical research: towards high-throughput, multi-omics, and single-cell resolution

Wenbo Guo, Yining Hu, Jingyang Qian, Lidan Zhu, Junyun Cheng, Jie Liao, Xiaohui Fan

2023, 50(9): 641 doi: 10.1016/j.jgg.2023.07.011

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Improved in situ sequencing for high-resolution targeted spatial transcriptomic analysis in tissue sections

Xinbin Tang, Jiayu Chen, Xinya Zhang, Xuzhu Liu, Zhaoxiang Xie, Kaipeng Wei, Jianlong Qiu, Weiyan Ma, Chen Lin, Rongqin Ke

2023, 50(9): 652 doi: 10.1016/j.jgg.2023.02.004

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Divergent expression of Neurl3 from hemogenic endothelial cells to hematopoietic stem progenitor cells during development

Xiaowei Ning, Junjie Du, Yandong Gong, Yingpeng Yao, Zhijie Bai, Yanli Ni, Yanyan Li, Zongcheng Li, Haixin Zhao, Jie Zhou, Bing Liu, Yu Lan, Siyuan Hou

2023, 50(9): 661 doi: 10.1016/j.jgg.2023.05.006

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Single-cell RNA-Seq reveals transcriptional regulatory networks directing the development of mouse maxillary prominence

Jian Sun, Yijun Lin, Nayoung Ha, Jianfei Zhang, Weiqi Wang, Xudong Wang, Qian Bian

2023, 50(9): 676 doi: 10.1016/j.jgg.2023.02.008

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Microbiota-mediated shaping of mouse spleen structure and immune function characterized by scRNA-seq and Stereo-seq

Yin Zhang, Juan Shen, Wei Cheng, Bhaskar Roy, Ruizhen Zhao, Tailiang Chai, Yifei Sheng, Zhao Zhang, Xueting Chen, Weiming Liang, Weining Hu, Qijun Liao, Shanshan Pan, Wen Zhuang, Yangrui Zhang, Rouxi Chen, Junpu Mei, Hong Wei, Xiaodong Fang

2023, 50(9): 688 doi: 10.1016/j.jgg.2023.04.012

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Single-cell transcriptomic analysis identifies a highly replicating Cd168⁺ skeletal stem/progenitor cell population in mouse long bones

Rui-Cong Hao, Zhi-Ling Li, Fei-Yan Wang, Jie Tang, Pei-Lin Li, Bo-Feng Yin, Xiao-Tong Li, Meng-Yue Han, Ning Mao, Bing Liu, Li Ding, Heng Zhu

2023, 50(9): 702 doi: 10.1016/j.jgg.2023.04.004

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VT3D: a visualization toolbox for 3D transcriptomic data

Lidong Guo, Yao Li, Yanwei Qi, Zhi Huang, Kai Han, Xiaobin Liu, Xin Liu, Mengyang Xu, Guangyi Fan

2023, 50(9): 713 doi: 10.1016/j.jgg.2023.04.001

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Integrating multi-modal information to detect spatial domains of spatial transcriptomics by graph attention network

Yuying Huo, Yilang Guo, Jiakang Wang, Huijie Xue, Yujuan Feng, Weizheng Chen, Xiangyu Li

2023, 50(9): 720 doi: 10.1016/j.jgg.2023.06.005

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